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BioMart Central Portal: An open database network for the biological community
- Source :
- Guberman, JM; Ai, J; Arnaiz, O; Baran, J; Blake, A; Baldock, R; et al.(2011). BioMart Central Portal: An open database network for the biological community. Database, 2011. doi: 10.1093/database/bar041. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/46g8h470, Database-The journal of Biological Databases and Curation, Database-The journal of Biological Databases and Curation, Oxford University Press, 2011, pp.bar041. ⟨10.1093/database/bar041⟩, Database : the journal of biological databases and curation, vol 2011, iss 0, Database-The journal of Biological Databases and Curation, 2011, pp.bar041. ⟨10.1093/database/bar041⟩, Guberman, J M, Ai, J, Arnaiz, O, Baran, J, Blake, A, Baldock, R, Chelala, C, Croft, D, Cros, A, Cutts, R J, Di Génova, A, Forbes, S, Fujisawa, T, Gadaleta, E, Goodstein, D M, Gundem, G, Haggarty, B, Haider, S, Hall, M, Harris, T, Haw, R, Hu, S, Hubbard, S, Hsu, J, Iyer, V, Jones, P, Katayama, T, Kinsella, R, Kong, L, Lawson, D, Liang, Y, Lopez-Bigas, N, Luo, J, Lush, M, Mason, J, Moreews, F, Ndegwa, N, Oakley, D, Perez-Llamas, C, Primig, M, Rivkin, E, Rosanoff, S, Shepherd, R, Simon, R, Skarnes, B, Smedley, D, Sperling, L, Spooner, W, Stevenson, P, Stone, K, Teague, J, Wang, J, Wang, J, Whitty, B, Wong, D T, Wong-Erasmus, M, Yao, L, Youens-Clark, K, Yung, C, Zhang, J & Kasprzyk, A 2011, ' BioMart Central Portal : an open database network for the biological community ', Database: The Journal of Biological Databases and Curation, vol. 2011, pp. bar041 . https://doi.org/10.1093/database/bar041, Database, 1-9. (2011), Recercat. Dipósit de la Recerca de Catalunya, instname, Database: The Journal of Biological Databases and Curation, Database, Artículos CONICYT, CONICYT Chile, instacron:CONICYT
- Publication Year :
- 2011
- Publisher :
- eScholarship, University of California, 2011.
-
Abstract
- International audience; BioMart Central Portal is a first of its kind, community-driven effort to provide unified access to dozens of biological databases spanning genomics, proteomics, model organisms, cancer data, ontology information and more. Anybody can contribute an independently maintained resource to the Central Portal, allowing it to be exposed to and shared with the research community, and linking it with the other resources in the portal. Users can take advantage of the common interface to quickly utilize different sources without learning a new system for each. The system also simplifies cross-database searches that might otherwise require several complicated steps. Several integrated tools streamline common tasks, such as converting between ID formats and retrieving sequences. The combination of a wide variety of databases, an easy-to-use interface, robust programmatic access and the array of tools make Central Portal a one-stop shop for biological data querying. Here, we describe the structure of Central Portal and show example queries to demonstrate its capabilities. Database URL: http://central.biomart.org.
- Subjects :
- Biomedical Research
Databases, Factual
Interface (Java)
Computer science
Data management
International Cooperation
Biological database
Ontology (information science)
computer.software_genre
IDENTIFICATIONS
User-Computer Interface
0302 clinical medicine
Resource (project management)
Medicine(all)
0303 health sciences
Biological data
Genome
Database
Agricultural and Biological Sciences(all)
[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]
030220 oncology & carcinogenesis
KEGG
Viruses
Original Article
The Internet
General Agricultural and Biological Sciences
GENOMICS
Information Systems
General Biochemistry, Genetics and Molecular Biology
World Wide Web
03 medical and health sciences
Databases
Library and Information Studies
Animals
Humans
Bases de dades -- Gestió
Factual
030304 developmental biology
Structure (mathematical logic)
Internet
Information retrieval
Bacteria
business.industry
Biochemistry, Genetics and Molecular Biology(all)
Fungi
Data Format
Database Management Systems
[INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]
business
computer
Subjects
Details
- Language :
- English
- ISSN :
- 17580463
- Database :
- OpenAIRE
- Journal :
- Guberman, JM; Ai, J; Arnaiz, O; Baran, J; Blake, A; Baldock, R; et al.(2011). BioMart Central Portal: An open database network for the biological community. Database, 2011. doi: 10.1093/database/bar041. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/46g8h470, Database-The journal of Biological Databases and Curation, Database-The journal of Biological Databases and Curation, Oxford University Press, 2011, pp.bar041. ⟨10.1093/database/bar041⟩, Database : the journal of biological databases and curation, vol 2011, iss 0, Database-The journal of Biological Databases and Curation, 2011, pp.bar041. ⟨10.1093/database/bar041⟩, Guberman, J M, Ai, J, Arnaiz, O, Baran, J, Blake, A, Baldock, R, Chelala, C, Croft, D, Cros, A, Cutts, R J, Di Génova, A, Forbes, S, Fujisawa, T, Gadaleta, E, Goodstein, D M, Gundem, G, Haggarty, B, Haider, S, Hall, M, Harris, T, Haw, R, Hu, S, Hubbard, S, Hsu, J, Iyer, V, Jones, P, Katayama, T, Kinsella, R, Kong, L, Lawson, D, Liang, Y, Lopez-Bigas, N, Luo, J, Lush, M, Mason, J, Moreews, F, Ndegwa, N, Oakley, D, Perez-Llamas, C, Primig, M, Rivkin, E, Rosanoff, S, Shepherd, R, Simon, R, Skarnes, B, Smedley, D, Sperling, L, Spooner, W, Stevenson, P, Stone, K, Teague, J, Wang, J, Wang, J, Whitty, B, Wong, D T, Wong-Erasmus, M, Yao, L, Youens-Clark, K, Yung, C, Zhang, J & Kasprzyk, A 2011, ' BioMart Central Portal : an open database network for the biological community ', Database: The Journal of Biological Databases and Curation, vol. 2011, pp. bar041 . https://doi.org/10.1093/database/bar041, Database, 1-9. (2011), Recercat. Dipósit de la Recerca de Catalunya, instname, Database: The Journal of Biological Databases and Curation, Database, Artículos CONICYT, CONICYT Chile, instacron:CONICYT
- Accession number :
- edsair.doi.dedup.....6b98ec9bc036b09f91583392807c6ba1
- Full Text :
- https://doi.org/10.1093/database/bar041.