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Genome wide analysis and comparative docking studies of new diaryl furan derivatives against human cyclooxygenase-2, lipoxygenase, thromboxane synthase and prostacyclin synthase enzymes involved in inflammatory pathway
- Source :
- Journal of molecular graphicsmodelling. 28(4)
- Publication Year :
- 2009
-
Abstract
- In an effort to develop potent anti-inflammatory and antithrombotic drugs, a series of new 4-(2-phenyltetrahydrofuran-3-yl) benzene sulfonamide analogs were designed and docked against homology models of human cyclooxygenase-2 (COX-2), lipoxygenase and thromboxane synthase enzymes built using MODELLER 7v7 software and refined by molecular dynamics for 2 ns in a solvated layer. Validation of these homology models by procheck, verify-3D and ERRAT programs revealed that these models are highly reliable. Docking studies of 4-(2-phenyltetrahydrofuran-3-yl) benzene sulfonamide analogs designed by substituting different chemical groups on benzene rings replacing 1H pyrazole in celecoxib with five membered thiophene, furan, 1H pyrrole, 1H imidazole, thiazole and 1,3-oxazole showed that diaryl furan molecules showed good binding affinity towards mouse COX-2. Further, docking studies of diaryl furan derivatives are likely to have superior thromboxane synthase and COX-2 selectivity. Docking studies against site directed mutagenesis of Arg120Ala, Ser530Ala, Ser530Met and Tyr355Phe enzymes displayed the effect of inhibition of COX-2. Drug likeliness and activity decay for these inhibitors showed that these molecules act as best drugs at very low concentrations.
- Subjects :
- Models, Molecular
Stereochemistry
Lipoxygenase
Molecular Sequence Data
Pyrazole
Molecular Dynamics Simulation
Protein Structure, Secondary
Prostacyclin synthase
chemistry.chemical_compound
Cytochrome P-450 Enzyme System
Furan
Catalytic Domain
Materials Chemistry
Cytochrome P-450 Enzyme Inhibitors
Humans
Cyclooxygenase Inhibitors
Amino Acid Sequence
Lipoxygenase Inhibitors
Physical and Theoretical Chemistry
Thiazole
Furans
Spectroscopy
Phylogeny
chemistry.chemical_classification
Inflammation
biology
Genome, Human
Reproducibility of Results
Computer Graphics and Computer-Aided Design
Intramolecular Oxidoreductases
Enzyme
chemistry
Docking (molecular)
Cyclooxygenase 2
Structural Homology, Protein
biology.protein
Cyclooxygenase 1
Thromboxane-A synthase
Cyclooxygenase
Thromboxane-A Synthase
Sequence Alignment
Subjects
Details
- ISSN :
- 18734243
- Volume :
- 28
- Issue :
- 4
- Database :
- OpenAIRE
- Journal :
- Journal of molecular graphicsmodelling
- Accession number :
- edsair.doi.dedup.....68990a6a1cf52d59e40b3d14e069ab36