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Engineering self-organized criticality in living cells
- Source :
- UPCommons. Portal del coneixement obert de la UPC, Universitat Politècnica de Catalunya (UPC), Nature Communications, Nature Communications, Vol 12, Iss 1, Pp 1-10 (2021), Digital.CSIC. Repositorio Institucional del CSIC, instname
- Publication Year :
- 2021
- Publisher :
- Springer Science and Business Media LLC, 2021.
-
Abstract
- Complex dynamical fluctuations, from intracellular noise, brain dynamics or computer traffic display bursting dynamics consistent with a critical state between order and disorder. Living close to the critical point has adaptive advantages and it has been conjectured that evolution could select these critical states. Is this the case of living cells? A system can poise itself close to the critical point by means of the so-called self-organized criticality (SOC). In this paper we present an engineered gene network displaying SOC behaviour. This is achieved by exploiting the saturation of the proteolytic degradation machinery in E. coli cells by means of a negative feedback loop that reduces congestion. Our critical motif is built from a two-gene circuit, where SOC can be successfully implemented. The potential implications for both cellular dynamics and behaviour are discussed.<br />This work was supported by the Botin Foundation by Banco Santander through its Santander Universities Global Division, the Spanish Ministry of Economy and Competitiveness, grant AEI-PID2019-111680GB-I00/AEI/10.13039/501100011033, an AGAUR FI 2018 grant, and the Santa Fe Institute (where the key idea was conceived). J.S. and A.G. have been partially funded by the CERCA Programme of the Generalitat de Catalunya. J.S. acknowledges support from Agencia Estatal de Investigación grant RTI2018-098322-B-I00 and Ramón y Cajal contract RYC-2017-22243. A.G. has been funded by the AGAUR grant 2017-SGR-1049 and by the MINECO-FEDER-UE grants PGC-2018-098676-B-100 and RTI2018-093860-B-C21.
- Subjects :
- 0301 basic medicine
Computer science
Science
Linear models (Statistics)
General Physics and Astronomy
Proteolytic degradation
Topology
01 natural sciences
Article
General Biochemistry, Genetics and Molecular Biology
03 medical and health sciences
Bursting
Critical point (thermodynamics)
Negative feedback
0103 physical sciences
Escherichia coli
Author Correction
010306 general physics
Cell Engineering
Feedback, Physiological
Criticality
Multidisciplinary
Models, Genetic
Escherichia coli Proteins
Matemàtiques i estadística::Equacions diferencials i integrals::Sistemes dinàmics [Àrees temàtiques de la UPC]
Gene Expression Regulation, Bacterial
General Chemistry
Self-organized criticality
Dynamics
030104 developmental biology
Genetic circuit engineering
Neurones -- Models matemàtics
Proteolysis
Dinàmica
Order and disorder
Single-Cell Analysis
Genetic Engineering
Subjects
Details
- ISSN :
- 20411723
- Volume :
- 12
- Database :
- OpenAIRE
- Journal :
- Nature Communications
- Accession number :
- edsair.doi.dedup.....61c1aeff00459ad1d0343c5d81ee262c
- Full Text :
- https://doi.org/10.1038/s41467-021-24695-4