Model building of a thermolysin-like protease by mutagenesis

The present study concerns the use of site-directed muta- unfortunate in the case of NP-sub, since this enzyme is used genesis experiments to optimize a three-dimensional model in various industrial processes that could be improved if of the neutral protease of Bacillus subtilis (NP-sub). An rational manipulation of NP-sub properties would be possible. initial model of NP-sub was constructed using the crystal NP-sub-shares 47% sequence identity with thermolysin. structures of the homologous neutral proteases of Bacillus Studies of structures of homologous proteins (Chothia and thermoproteolyticus (thermolysin) and Bacillus cereus as Lesk, 1986; Sander and Schneider, 1991) suggest that a model templates. The largest portion of NP-sub could be modelled based on such a degree of sequence identity is often fairly satisfactorily, using standard techniques, but several accurate in the core region, but larger errors are to be expected surface-located regions could only be modelled with a in surface-located regions. A good model of the latter regions high degree of uncertainty. In order to make the model is of particular importance for engineering the stability of more reliable in these regions a ‘model building by muta- aspecific proteases such as subtilisin and NPs. Surface-located genesis’ approach was adopted. Mutations were designed regions are of major importance in the partial unfolding such that their effect on thermal stability could indicate processes that render the protease susceptible to autolysis and how their local environment should be modelled. This that are the rate-limiting step in the thermal inactivation approach provided insight in the local structure of several process (Dahlquist et al., 1976; Braxton and Wells, 1992; regions in NP-sub that were hard to model on the basis of Vriend and Eijsink, 1993; Kidokoro et al., 1995). This is homology with the two known structures alone. illustrated, for example, by the fact that the difference in