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Research Data Management Toolkit (RDMkit): guidelines for plant phenotyping data management and sharing

Authors :
Floch, Erwan Le
Adam-Blondon, Anne-Françoise
Alic, Isabelle
Droesbeke, Bert
Dhondt, Stijn
Faria, Daniel
Beier, Sebastian
Neveu, Pascal
Francillonne, Nicolas
Michotey, Célia
Pommier, Cyril
Université Paris-Saclay, INRAE, BioinfOmics, Plant Bioinformatics Facility, Versailles, France (BioinfOmics, Plant Bioinformatics Facility)
Unité de Recherche Génomique Info (URGI)
Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
Mathématiques, Informatique et STatistique pour l'Environnement et l'Agronomie (MISTEA)
Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro Montpellier
Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)
VIBUGent Center for Plant Systems Biology
Universiteit Gent = Ghent University (UGENT)
LaSIGE [Lisboa]
Universidade de Lisboa = University of Lisbon (ULISBOA)-Faculdade de Ciências
BioData.pt, Instituto Gulbenkian de Ciência, 2780-156 Oeiras, Portugal
Institute of Bio- and Geosciences [Jülich] (IBG)
Forschungszentrum Jülich GmbH | Centre de recherche de Juliers
Helmholtz-Gemeinschaft = Helmholtz Association-Helmholtz-Gemeinschaft = Helmholtz Association
IPPN
European Project: 862613,H2020-AGENT
European Project: 871075,ELIXIR-CONVERGE
Source :
7th International Plant Phenotyping Symposium, 7th International Plant Phenotyping Symposium, Sep 2022, Wageningen, Netherlands., 2022, ⟨10.5281/zenodo.7148792⟩
Publication Year :
2022
Publisher :
HAL CCSD, 2022.

Abstract

Efficient sharing of plant phenotyping data is a challenge that has been addressed during the last two decades by European infrastructures (ELIXIR, EMPHASIS) and international communities (CGIAR), that allowed to coordinate the effort of major institutes developing activities in the domain. They produced consistent and interoperable sets of resources to support plant phenotyping data management: - data standards: Minimum Information About Plant Phenotyping Experiment (MIAPPE) and the Breeding API (BrAPI) - databases: PIPPA, PHIS, GnpIS, e!DAL-PGP among others - exchange file formats: MIAPPE Template, ISA-Tab These systems and standards have been designed to be as close as possible to researchers and experimenters needs. As a consequence, important efforts have been made to ease their adoption through documentations and trainings. However all these resources remain dispersed, and it can be complicated for new users to know where to get the right information. To address this issue, ELIXIR has developed in the frame of the ELIXIR-CONVERGE project a central portal of guidelines and resources supporting FAIR data management in Life Sciences: the Research Data Management toolkit (RDMkit). RDMkit is a one stop portal that gives a general overview and understanding of the complementarity of the solutions, and links back to the extended documentation and training materials maintained for each of them. To develop and sustain this portal, ELIXIR has engaged with various communities, infrastructures and projects, among which the ELIXIR plant science community and the AGENT project. In the RDMkit, the plant community has built a set of pages and in particular is building plant phenotyping guidelines. The present poster gives an overview of the RDMkit logic and of the solutions presented in the plant sciences pages, including the procedures and contact to submit enrichment and additional solutions.

Details

Language :
English
Database :
OpenAIRE
Journal :
7th International Plant Phenotyping Symposium, 7th International Plant Phenotyping Symposium, Sep 2022, Wageningen, Netherlands., 2022, ⟨10.5281/zenodo.7148792⟩
Accession number :
edsair.doi.dedup.....5e55471063730ad99bac91eb9dba5066
Full Text :
https://doi.org/10.5281/zenodo.7148792⟩