Back to Search
Start Over
Complete genome sequence of Crassaminicella sp. 143-21,isolated from a deep-sea hydrothermal vent
- Source :
- Marine Genomics, Marine Genomics, Elsevier, 2021, pp.100899. ⟨10.1016/j.margen.2021.100899⟩, Marine Genomics, 2021, pp.100899. ⟨10.1016/j.margen.2021.100899⟩
- Publication Year :
- 2021
- Publisher :
- HAL CCSD, 2021.
-
Abstract
- International audience; Crassaminicella sp. 143-21, a putative new species isolated from deep-sea hydrothermal vent chimney on the Central Indian Ridge (CIR), is an anaerobic, thermophilic and rod-shaped bacterium belonging to the family Clostridiaceae. In this study, we present the complete genome sequence of strain 143-21, comprising 2,756,133 bp with a G + C content of 31.1%. In total, 2427 protein coding genes, 121 tRNA genes and 33 rRNA genes were obtained. Genomic analysis of strain 143-21 revealed that numerous genes related to organic matter transport and catabolism, including peptide transport, amino acid transport, saccharide transport, ethanolamine transport and corresponding metabolic pathways. Further, the genome contains a large proportion of genes involved in translation, ribosomal structure, and signal transduction. These genes might facilitate microbial survival in deep-sea hydrothermal vent environment. The genome of strain 143-21 will be helpful for further understanding its adaptive strategies in the deep-sea hydrothermal vent environment.
- Subjects :
- [SDV]Life Sciences [q-bio]
Clostridiaceae
Ethanolamine transport
Aquatic Science
Biology
Genome
Chemoorganotroph
Complete genome
03 medical and health sciences
Hydrothermal Vents
RNA, Ribosomal, 16S
Genetics
Seawater
Adaptation
Gene
ComputingMilieux_MISCELLANEOUS
Phylogeny
030304 developmental biology
Whole genome sequencing
Base Composition
0303 health sciences
030306 microbiology
Ridge (biology)
Hydrothermal vent
Sequence Analysis, DNA
Ribosomal RNA
Crassaminicella
Peptide transport
[SDE.BE]Environmental Sciences/Biodiversity and Ecology
Genome, Bacterial
Subjects
Details
- Language :
- English
- ISSN :
- 18747787
- Database :
- OpenAIRE
- Journal :
- Marine Genomics, Marine Genomics, Elsevier, 2021, pp.100899. ⟨10.1016/j.margen.2021.100899⟩, Marine Genomics, 2021, pp.100899. ⟨10.1016/j.margen.2021.100899⟩
- Accession number :
- edsair.doi.dedup.....5cf0aa502c01b372a0f7e11fc1f73536