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The Ion-Dipole Correction of the 3DRISM Solvation Model to Accurately Compute Water Distributions around Negatively Charged Biomolecules

Authors :
Siqin Cao
Yunrui Qiu
Ilona C. Unarta
Eshani C. Goonetilleke
Xuhui Huang
Source :
The Journal of Physical Chemistry B. 126:8632-8645
Publication Year :
2022
Publisher :
American Chemical Society (ACS), 2022.

Abstract

The 3D reference interaction site model (3DRISM) provides an efficient grid-based solvation model to compute the structural and thermodynamic properties of biomolecules in aqueous solutions. However, it remains challenging for existing 3DRISM methods to correctly predict water distributions around negatively charged solute molecules. In this paper, we first show that this challenge is mainly due to the orientation of water molecules in the first solvation shell of the negatively charged solute molecules. To properly consider this orientational preference, position-dependent two-body intramolecular correlations of solvent need to be included in the 3DRISM theory, but direct evaluations of these position-dependent two-body intramolecular correlations remain numerically intractable. To address this challenge, we introduce the Ion-Dipole Correction (IDC) to the 3DRISM theory, in which we incorporate the orientation preference of water molecules via an additional solute-solvent interaction term (i.e., the ion-dipole interaction) while keeping the formulism of the 3DRISM equation unchanged. We prove that this newly introduced IDC term is equivalent to an effective direct correlation function which can effectively consider the orientation effect that arises from position dependent two-body correlations. We first quantitatively validate our 3DRISM-IDC theory combined with the PSE3 closure on Cl

Details

ISSN :
15205207 and 15206106
Volume :
126
Database :
OpenAIRE
Journal :
The Journal of Physical Chemistry B
Accession number :
edsair.doi.dedup.....5a31ff9b109dd146115dbe04c0ad89b0
Full Text :
https://doi.org/10.1021/acs.jpcb.2c04431