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Genome Mining Expands the Chemical Diversity of the Cyanobactin Family to Include Highly Modified Linear Peptides

Authors :
Jouni Jokela
Matti Wahlsten
Niina Leikoski
Muriel Gugger
Alexandra Calteau
Liwei Liu
Perttu Permi
David P. Fewer
Cheryl A. Kerfeld
Kaarina Sivonen
Department of Food and Environmental Sciences
Helsingin yliopisto = Helsingfors universitet = University of Helsinki
Collection des Cyanobactéries
Institut Pasteur [Paris] (IP)
Génomique métabolique (UMR 8030)
Genoscope - Centre national de séquençage [Evry] (GENOSCOPE)
Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA))
Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA))
Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS)
HiLIFE - Institute of Biotechnology [Helsinki] (BI)
Helsinki Institute of Life Science (HiLIFE)
Helsingin yliopisto = Helsingfors universitet = University of Helsinki-Helsingin yliopisto = Helsingfors universitet = University of Helsinki
Department of Plant and Microbial Biology [Berkeley]
University of California [Berkeley] (UC Berkeley)
University of California (UC)-University of California (UC)
US Department of Energy
Joint Genome Institute (JGI)
This research was supported by grants from the Academy of Finland to K.S. (118637, 258827) and D.P.F. (259505), and a Helsinki University Research grant (788/51/2010) to D.P.F.. N.L. is a student and L.L. is a matching funds student at Viikki Doctoral Programme in Molecular Biosciences. The work conducted by the US Department of Energy Joint Genome Institute is supported by the Office of Science of the US Department of Energy under contract no. DE-AC02-05CH11231. We are grateful to Lyudmila Saari for her valuable help in handling the cultures.
University of Helsinki
Institut Pasteur [Paris]
Direction de Recherche Fondamentale (CEA) (DRF (CEA))
Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Université d'Évry-Val-d'Essonne (UEVE)
University of Helsinki-University of Helsinki
University of California [Berkeley]
University of California-University of California
Source :
Chemistry and Biology, Chemistry and Biology, 2013, 20 (8), pp.1033-1043. ⟨10.1016/j.chembiol.2013.06.015⟩, Chemistry and Biology, Elsevier, 2013, 20 (8), pp.1033-1043. ⟨10.1016/j.chembiol.2013.06.015⟩
Publication Year :
2013
Publisher :
HAL CCSD, 2013.

Abstract

International audience; Ribosomal peptides are produced through the posttranslational modification of short precursor peptides. Cyanobactins are a growing family of cyclic ribosomal peptides produced by cyanobacteria. However, a broad systematic survey of the genetic capacity to produce cyanobactins is lacking. Here we report the identification of 31 cyanobactin gene clusters from 126 genomes of cyanobacteria. Genome mining suggested a complex evolutionary history defined by horizontal gene transfer and rapid diversification of precursor genes. Extensive chemical analyses demonstrated that some cyanobacteria produce short linear cyanobactins with a chain length ranging from three to five amino acids. The linear peptides were N-prenylated and O-methylated on the N and C termini, respectively, and named aeruginosamide and viridisamide. These findings broaden the structural diversity of the cyanobactin family to include highly modified linear peptides with rare posttranslational modifications.

Details

Language :
English
ISSN :
10745521
Database :
OpenAIRE
Journal :
Chemistry and Biology, Chemistry and Biology, 2013, 20 (8), pp.1033-1043. ⟨10.1016/j.chembiol.2013.06.015⟩, Chemistry and Biology, Elsevier, 2013, 20 (8), pp.1033-1043. ⟨10.1016/j.chembiol.2013.06.015⟩
Accession number :
edsair.doi.dedup.....57f5a21bfd8cd5faa11d3c7181385c95
Full Text :
https://doi.org/10.1016/j.chembiol.2013.06.015⟩