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Detection of a novel active transposable element in Caldicellulosiruptor hydrothermalis and a new search for elements in this genus

Authors :
Janet Westpheling
Joel Farkas
Daehwan Chung
Source :
Journal of Industrial Microbiology and Biotechnology. 40:517-521
Publication Year :
2013
Publisher :
Oxford University Press (OUP), 2013.

Abstract

We show that a previously annotated hypothetical protein is the transposase of a new and active IS element, ISCahy1, widespread in Caldicellulosiruptor species. Transposition generated an 11-bp direct repeat at the insertion site in Caldicellulosiruptor hydrothermalis, suggesting a cut-and-paste mechanism. The discovery of an active insertion sequence in Caldicellulosiruptor species led to a survey of potential IS elements in the genome sequences of eight Caldicellulosiruptor species that identified several new elements, including one novel to this genus.

Details

ISSN :
14765535 and 13675435
Volume :
40
Database :
OpenAIRE
Journal :
Journal of Industrial Microbiology and Biotechnology
Accession number :
edsair.doi.dedup.....57c13bd2967e4ddc5c9c2f2f2a1add78