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Final Products of One-Electron Oxidation of Cyclic Dipeptides Containing Methionine Investigated by IRMPD Spectroscopy: Does the Free Radical Choose the Final Compound?
- Source :
- Journal of Physical Chemistry B, Journal of Physical Chemistry B, 2022, 126 (48), pp.10055-10068. ⟨10.1021/acs.jpcb.2c06541⟩, Journal of Physical Chemistry B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical, 126, 10055-10068, Journal of Physical Chemistry B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical, 126, 48, pp. 10055-10068, Journal of Physical Chemistry B, 126(48), 10055-10068. American Chemical Society
- Publication Year :
- 2022
-
Abstract
- Reactive oxygen species (ROS) such as hydrogen peroxide (H2O2) and the hydroxyl radical (•OH) have specific functions in biological processes, while their uncontrolled production and reactivity are known to be determining factors in pathophysiology. Methionine (Met) residues act as endogenous antioxidants, when they are oxidized into methionine sulfoxide (MetSO), thus depleting ROS and protecting the protein. We employed tandem mass spectrometry combined with IR multiple photon dissociation spectroscopy to study the oxidation induced by OH radicals produced by γradiolysis on model cyclic dipeptides c(LMetLMet), c(LMetDMet), and c(GlyMet). Our aim was to characterize the geometries of the oxidized peptides in the gas phase and to understand the relationship between the structure of the 2-center 3-electron (2c-3e) free radical formed in the first step of the oxidation process and the final compound. Density functional theory calculations were performed to characterize the lowest energy structures of the final product of oxidation and to interpret the IR spectra. Collision-induced dissociation tandem mass spectrometry (CID-MS2) experiments of oxidized c(LMetLMet)H+ and c(LMetDMet)H+ led to the loss of one or two oxidized sulfenic acid molecules, indicating that the addition of one or two oxygen atoms occurs on the sulfur atom of both methionine side chains and no sulfone formation was observed. The CID-MS2 fragmentation mass spectrum of oxidized c(GlyMet)H+ showed only the loss of one oxidized sulfenic acid molecule. Thus, the final products of oxidation are the same regardless of the structure of the precursor sulfur-centered free radical.
- Subjects :
- FELIX Molecular Structure and Dynamics
IRMPD spectroscopy
Spectrum Analysis
-radiolysis
One-electron oxidation
cyclic peptides
Electrons
Dipeptides
Hydrogen Peroxide
Sulfenic Acids
Surfaces, Coatings and Films
[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry
Methionine
One-electron oxidation -radiolysis IRMPD spectroscopy tandem mass spectrometry cyclic peptides
tandem mass spectrometry
Materials Chemistry
[PHYS.PHYS.PHYS-CHEM-PH]Physics [physics]/Physics [physics]/Chemical Physics [physics.chem-ph]
Physical and Theoretical Chemistry
Sulfur
Subjects
Details
- ISSN :
- 15205207 and 15206106
- Volume :
- 126
- Issue :
- 48
- Database :
- OpenAIRE
- Journal :
- The journal of physical chemistry. B
- Accession number :
- edsair.doi.dedup.....57b4903c7acdf95fe7833cca57d4ff1a
- Full Text :
- https://doi.org/10.1021/acs.jpcb.2c06541⟩