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How much of protein sequence space has been explored by life on Earth?

Authors :
Andrew R. Thomson
David T. F. Dryden
John H. White
Source :
Journal of the Royal Society Interface, Dryden, D T F, Thomson, A R & White, J H 2008, ' How much of protein sequence space has been explored by life on Earth? ', Journal of the Royal Society, Interface, vol. 5, no. 25, pp. 953-956 . https://doi.org/10.1098/rsif.2008.0085
Publication Year :
2008
Publisher :
The Royal Society, 2008.

Abstract

We suggest that the vastness of protein sequence space is actually completely explorable during the populating of the Earth by life by considering upper and lower limits for the number of organisms, genome size, mutation rate and the number of functionally distinct classes of amino acids. We conclude that rather than life having explored only an infinitesimally small part of sequence space in the last 4 Gyr, it is instead quite plausible for all of functional protein sequence space to have been explored and that furthermore, at the molecular level, there is no role for contingency.

Details

Language :
English
ISSN :
17425662 and 17425689
Volume :
5
Issue :
25
Database :
OpenAIRE
Journal :
Journal of the Royal Society Interface
Accession number :
edsair.doi.dedup.....56b65a14175c3e5c2ce223414d2d56f3
Full Text :
https://doi.org/10.1098/rsif.2008.0085