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How much of protein sequence space has been explored by life on Earth?
- Source :
- Journal of the Royal Society Interface, Dryden, D T F, Thomson, A R & White, J H 2008, ' How much of protein sequence space has been explored by life on Earth? ', Journal of the Royal Society, Interface, vol. 5, no. 25, pp. 953-956 . https://doi.org/10.1098/rsif.2008.0085
- Publication Year :
- 2008
- Publisher :
- The Royal Society, 2008.
-
Abstract
- We suggest that the vastness of protein sequence space is actually completely explorable during the populating of the Earth by life by considering upper and lower limits for the number of organisms, genome size, mutation rate and the number of functionally distinct classes of amino acids. We conclude that rather than life having explored only an infinitesimally small part of sequence space in the last 4 Gyr, it is instead quite plausible for all of functional protein sequence space to have been explored and that furthermore, at the molecular level, there is no role for contingency.
- Subjects :
- Mutation rate
Protein Folding
Protein Conformation
Biomedical Engineering
Biophysics
Bioengineering
Biology
contingency
Biochemistry
Biomaterials
Evolution, Molecular
Sequence hypothesis
protein sequence
Protein sequencing
Protein structure
Report
evolution
Amino Acid Sequence
Peptide sequence
Genome size
Genetics
Quantitative Biology::Biomolecules
Models, Genetic
Proteins
Evolutionary biology
Protein folding
Sequence space (evolution)
Biotechnology
Subjects
Details
- Language :
- English
- ISSN :
- 17425662 and 17425689
- Volume :
- 5
- Issue :
- 25
- Database :
- OpenAIRE
- Journal :
- Journal of the Royal Society Interface
- Accession number :
- edsair.doi.dedup.....56b65a14175c3e5c2ce223414d2d56f3
- Full Text :
- https://doi.org/10.1098/rsif.2008.0085