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Crystallization and X-ray analysis of Borrelia burgdorferi β-barrel assembly machinery A
- Source :
- Acta Crystallogr F Struct Biol Commun
- Publication Year :
- 2020
-
Abstract
- Mitochondria, chloroplasts and several species of bacteria have outer membrane proteins (OMPs) that perform many essential biological functions. The β-barrel assembly machinery (BAM) complex is one of the OMPs of Borrelia burgdorferi, the pathogenic spirochete that causes Lyme disease, and its BamA component (BbBamA) includes a C-terminal β-barrel domain and five N-terminal periplasmic polypeptide-transport-associated (POTRA) domains, which together perform a central transport function. In the current work, the production, crystallization and X-ray analysis of the three N-terminal POTRA domains of BbBamA (BbBamA-POTRA P1–P3; residues 30–273) were carried out. The crystals of BbBamA-POTRA P1–P3 belonged to space group P21, with unit-cell parameters a = 45.353, b = 111.538, c = 64.376 Å, β = 99.913°. The Matthews coefficient was calculated to be 2.92 Å3 Da−1, assuming the presence of two molecules per asymmetric unit, and the corresponding solvent content was 57.9%. Owing to the absence of an ideal homology model, numerous attempts to solve the BbBamA-POTRA P1–P3 structure using molecular replacement (MR) failed. In order to solve the structure, further trials using selenomethionine derivatization are currently being carried out.
- Subjects :
- Models, Molecular
Stereochemistry
Protein Conformation
Biophysics
Sequence Homology
Molecular Dynamics Simulation
Crystallography, X-Ray
Biochemistry
law.invention
Research Communications
03 medical and health sciences
Structural Biology
law
Bama
Genetics
Molecular replacement
Homology modeling
Amino Acid Sequence
Crystallization
Borrelia burgdorferi
030304 developmental biology
0303 health sciences
biology
030306 microbiology
Chemistry
Periplasmic space
Condensed Matter Physics
biology.organism_classification
Bacterial outer membrane
Bacteria
Bacterial Outer Membrane Proteins
Subjects
Details
- ISSN :
- 2053230X
- Volume :
- 76
- Issue :
- Pt 6
- Database :
- OpenAIRE
- Journal :
- Acta crystallographica. Section F, Structural biology communications
- Accession number :
- edsair.doi.dedup.....537a0e181612cc040867e2ac58647603