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Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans
- Source :
- Marine Biotechnology (New York, N.y.)
- Publication Year :
- 2020
- Publisher :
- Springer Science and Business Media LLC, 2020.
-
Abstract
- Watasenia scintillans, a sparkling enope squid, has bioluminescence organs to illuminate its body with its own luciferase activity. To clarify the molecular mechanism underlying its scintillation, we analysed high-throughput sequencing data acquired previously and obtained draft genome sequences accomplished with comparative genomic data among the cephalopods. The genome mapped by transcriptome data showed that (1) RNA editing contributed to transcriptome variation of lineage specific genes, such as W. scintillans luciferase, and (2) two types of luciferase enzymes were characterized with reasonable 3D models docked to a luciferin molecule. We report two different types of luciferase in one organism and possibly related to variety of colour types in the W. scintillans fluorescent organs. Electronic supplementary material The online version of this article (10.1007/s10126-020-10001-8) contains supplementary material, which is available to authorized users.
- Subjects :
- 0301 basic medicine
RNA editing
Color
Applied Microbiology and Biotechnology
Genome
Fluorescence
Cephalopod
Transcriptome
03 medical and health sciences
0302 clinical medicine
Animals
Bioluminescence
Luciferase
Luciferases
Repetitive elements
Gene
Genetics
biology
Decapodiformes
biology.organism_classification
Luciferin
3D modelling
Molecular Docking Simulation
Luminescent Proteins
030104 developmental biology
Cephalopoda
Watasenia scintillans
Original Article
Firefly squid
030217 neurology & neurosurgery
Subjects
Details
- ISSN :
- 14362236 and 14362228
- Volume :
- 22
- Database :
- OpenAIRE
- Journal :
- Marine Biotechnology
- Accession number :
- edsair.doi.dedup.....51259e402f42028fc31eead6a804015a