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Algoriphagus formosus sp. nov., isolated from coastal sediment
- Source :
- Antonie van Leeuwenhoek. 111(6)
- Publication Year :
- 2017
-
Abstract
- A Gram-stain negative, facultative anaerobic, non-motile, strongly orange-pigmented and rod-shaped bacterium, designated XAY3209T, was isolated from a marine sediment sample collected from the coast of Weihai, China. Strain XAY3209T was found to grow optimally at 30 °C, at pH 7.0 and in the presence of 2.0% (w/v) NaCl. Its genomic DNA G+C content was 41.9 mol%. On the basis of 16S rRNA gene sequence similarity, the novel isolate belongs to the family Cyclobacteriaceae and is related to the genus Algoriphagus. It shares 98.1% 16S rRNA sequence identity with Algoriphagus marincola, its close phylogenetic relative, but did not show similarities more than 97% with other members of the genus Algoriphagus with validly published names. It contained menaquinone-7 (MK-7) as the sole respiratory quinone, iso-C15:0, iso-C17:1 ω9c and Summed feature 3 (C16:1 ω7c and/or iso-C15:0 2-OH) as the major fatty acids. The major polar lipids were phosphatidylethanolamine, one unidentified aminolipid, one unidentified phospholipid and five unidentified lipids. Results of physiological experiments, biochemical tests and genome average nucleotide identity value (with A. marincola MCCC 1F01203T) indicate that strain XAY3209T is genetically and phenotypically distinct from the species of the genus Algoriphagus with validly published names. Strain XAY3209T therefore represents a novel species, for which the name Algoriphagus formosus sp. nov. is proposed. The type strain is XAY3209T (= KCTC 52842T = MCCC 1H00189T).
- Subjects :
- 0106 biological sciences
0301 basic medicine
Geologic Sediments
Family Cyclobacteriaceae
010603 evolutionary biology
01 natural sciences
Microbiology
Genome
03 medical and health sciences
RNA, Ribosomal, 16S
Seawater
Molecular Biology
Phylogeny
Genetics
Base Composition
biology
Phylogenetic tree
Bacteroidetes
Strain (biology)
General Medicine
biology.organism_classification
16S ribosomal RNA
Bacterial Typing Techniques
genomic DNA
030104 developmental biology
Algoriphagus
Bacteria
Subjects
Details
- ISSN :
- 15729699
- Volume :
- 111
- Issue :
- 6
- Database :
- OpenAIRE
- Journal :
- Antonie van Leeuwenhoek
- Accession number :
- edsair.doi.dedup.....509da7dfba5753fc7d0ef608f70fd400