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The genome of Tetranychus urticae reveals herbivorous pest adaptations

Authors :
Fernando Roch
Johannes Mathieu
T. Ryan Gregory
René Feyereisen
Stephane Rombauts
Edward J. Osborne
Anica Bjelica
Ryan M. Pace
Manuel Martinez
Lou Verdon
Isabel Diaz
Marie Navarro
Phuong Cao Thi Ngoc
Sergej Djuranovic
Rodrigo Mancilla Villalobos
Élio Sucena
Stefan R. Henz
Sara Magalhães
Gustavo Acevedo
Maria Navajas
Jeffrey L. Hutter
Guy Smagghe
Luc Tirry
Miodrag Grbic
Eric Bonnet
Marisela Vélez
Andre Pires-daSilva
Stephen D. Hudson
Yves Van de Peer
Masatoshi Iga
Jia Zeng
Catherine Blais
Kristof Demeestere
Marc Cazaux
Richard M. Clark
Jeffrey A. Fawcett
Vojislava Grbic
Jeremy Schmutz
Jan A. Veenstra
Thomas Van Leeuwen
Lisa M. Nagy
Soojin V. Yi
Cindy Martens
Aminael Sánchez-Rodríguez
Félix Ortego
Guy Baele
Laurent Farinelli
John Ewer
Pierre Rouzé
Olivier Christiaens
Lothar Wissler
Vladimir Zhurov
Erika Lindquist
Wannes Dermauw
Pedro Hernández-Crespo
Evolutionary Biology (IBED, FNWI)
Department of Biology
Northern Arizona University [Flagstaff]
Instituto de Ciencias de la Vid y el Vino - Institute of Grapevine and Wine Sciences
Partenaires INRAE
Faculty of Bioscience Engineering
Universiteit Gent = Ghent University [Belgium] (UGENT)
Utah State University (USU)
Department of plant Biotechnology and Bioinformatics
University of Gent
Department of plant systems biology
Flanders Institute for Biotechnology
Centro de Investigaciones Biológicas (CIB)
Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria = National Institute for Agricultural and Food Research and Technology (INIA)
Centre de Biologie pour la Gestion des Populations (UMR CBGP)
Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Université de Montpellier (UM)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro)
Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)
Instituto Gulbenkian de Ciência
Universidade Nova de Lisboa = NOVA University Lisbon (NOVA)
Department of Molecular and Cellular Biology
University of Arizona
School of Medicine
Johns Hopkins University (JHU)-Oncology Center
Institut de Neurosciences cognitives et intégratives d'Aquitaine (INCIA)
Université Bordeaux Segalen - Bordeaux 2-Université Sciences et Technologies - Bordeaux 1-SFR Bordeaux Neurosciences-Centre National de la Recherche Scientifique (CNRS)
Universidad de Valparaiso
University of Western Ontario (UWO)
Consejo Superior de Investigaciones Científicas [Madrid] (CSIC)
Facultad de Ciencas [Madrid]
Universidad Autonoma de Madrid (UAM)
School of Biology
Georgia Institute of Technology [Atlanta]
University of Texas
Université des Sciences Sociales (Toulouse 1)
Centre National de la Recherche Scientifique (CNRS)
Institute for Evolution and Biodiversity (IEB)
Westfälische Wilhelms-Universität Münster (WWU)
Université Catholique de Louvain = Catholic University of Louvain (UCL)
Université Pierre et Marie Curie - Paris 6 (UPMC)
Laboratoire de Biologie du Développement [Paris] (LBD)
Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut de Biologie Paris Seine (IBPS)
Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
Max Planck Institute for Developmental Biology
Max-Planck-Gesellschaft
Department of Integrative Biology (University of Guelph)
University of Guelph
Boyce Thompson Institute [Ithaca]
Southern Crop Protection and Food Research Centre
Agriculture and Agri-Food [Ottawa] (AAFC)
Fasteris SA
Hudson Alpha Institute for Biotechnology
Joint Genome Institute (JGI)
Interactions Biotiques et Santé Végétale
Institut National de la Recherche Agronomique (INRA)
Universiteit Gent = Ghent University (UGENT)
Department of Molecular and Cellular Biology [University of Arizona]
Université Bordeaux Segalen - Bordeaux 2-Université Sciences et Technologies - Bordeaux 1 (UB)-SFR Bordeaux Neurosciences-Centre National de la Recherche Scientifique (CNRS)
Universidad Autónoma de Madrid (UAM)
Université Toulouse Capitole (UT Capitole)
Université de Toulouse (UT)
Westfälische Wilhelms-Universität Münster = University of Münster (WWU)
Laboratoire de Biologie du Développement [IBPS] (LBD)
Agriculture and Agri-Food (AAFC)
Fasteris SA [Plan-les-Ouates, Switzerland]
Source :
Nature, 479(7374), 1424-1433. Nature Publishing Group, Nature, Nature, Nature Publishing Group, 2011, 479 (7374), pp.487-492. ⟨10.1038/nature10640⟩, Digital.CSIC. Repositorio Institucional del CSIC, instname, Nature, 2011, 479 (7374), pp.487-492. ⟨10.1038/nature10640⟩, RIUR: Repositorio Institucional de la Universidad de La Rioja, Universidad de La Rioja (UR), NATURE, Artículos CONICYT, CONICYT Chile, instacron:CONICYT, Repositorio Institucional del Instituto Madrileño de Estudios Avanzados en Nanociencia, RIUR. Repositorio Institucional de la Universidad de La Rioja
Publication Year :
2011

Abstract

6 páginas, 5 figuras -- PAGS nros. 487-492<br />Grbic, Miodrag et.al.<br />The spider mite Tetranychus urticae is a cosmopolitan agricultural pest with an extensive host plant range and an extreme record of pesticide resistance. Here we present the completely sequenced and annotated spider mite genome, representing the first complete chelicerate genome. At 90 megabases T. urticae has the smallest sequenced arthropod genome. Compared with other arthropods, the spider mite genome shows unique changes in the hormonal environment and organization of the Hox complex, and also reveals evolutionary innovation of silk production. We find strong signatures of polyphagy and detoxification in gene families associated with feeding on different hosts and in new gene families acquired by lateral gene transfer. Deep transcriptome analysis of mites feeding on different plants shows how this pest responds to a changing host environment. The T. urticae genome thus offers new insights into arthropod evolution and plant–herbivore interactions, and provides unique opportunities for developing novel plant protection strategies<br />M.G. and V.G. acknowledge support from NSERC Strategic Grant STPGP 322206-05, Marie Curie Incoming International Fellowship, OECD Co-operative Research Programme: Biological resource management for Sustainable Agricultural Systems JA00053351, and Ontario Research Fund–Global Leadership in Genomics and Life Sciences GL2-01-035. The genome and transcriptome sequencing projects were funded by the Government of Canada through Genome Canada and the Ontario Genomics Institute (OGI-046), JGI Community Sequencing Program grant 777506 to M.G., a University of Utah SEED grant (to R.M.C.), and National Science Foundation (NSF) grant 0820985 (to R.M.C., Principal Investigator L. Sieburth); work conducted by the US Department of Energy Joint Genome Institute is supported by the Office of Science of the US Department of Energy under contract No. DE-AC02-05CH11231

Details

Language :
English
ISSN :
00280836, 14764679, and 14764687
Database :
OpenAIRE
Journal :
Nature, 479(7374), 1424-1433. Nature Publishing Group, Nature, Nature, Nature Publishing Group, 2011, 479 (7374), pp.487-492. ⟨10.1038/nature10640⟩, Digital.CSIC. Repositorio Institucional del CSIC, instname, Nature, 2011, 479 (7374), pp.487-492. ⟨10.1038/nature10640⟩, RIUR: Repositorio Institucional de la Universidad de La Rioja, Universidad de La Rioja (UR), NATURE, Artículos CONICYT, CONICYT Chile, instacron:CONICYT, Repositorio Institucional del Instituto Madrileño de Estudios Avanzados en Nanociencia, RIUR. Repositorio Institucional de la Universidad de La Rioja
Accession number :
edsair.doi.dedup.....50565da515be06d2d04a4bb2b9514b01