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Effect of active-site aromatic residues Tyr or Phe on activity and stability of glucose 6-phosphate dehydrogenase from psychrophilic Arctic bacterium Sphingomonas sp
- Source :
- Biochimica et biophysica acta. Proteins and proteomics. 1869(1)
- Publication Year :
- 2020
-
Abstract
- Cold-adapted enzymes maintain correct conformation at their active sites despite their intrinsically flexible structures. The psychrophilic Arctic bacterium Sphingomonas sp. PAMC 26621 has two glucose 6-phosphate dehydrogenase (G6PD) isozymes, SpG6PD1 involved in the Entner-Doudoroff pathway and SpG6PD2 in the oxidative pentose phosphate pathway. Structural modeling of SpG6PD1 showed that the hydroxyl group of Tyr177 participates in substrate binding by forming a hydrogen bond with the phosphate group of glucose 6-phosphate, whereas in SpG6PD2, a Phe residue is present in the corresponding position of Tyr177. In this study, we investigated how subtle differences in aromatic residues in the substrate-binding pocket of SpG6PD1 affect enzymatic activity and stability. Mutations of Tyr177 to Ala, His, Phe, and Trp caused increases in the rigidity of the SpG6PD1 structure. Particularly, mutants Y177F and Y177W showed increased thermal stabilities compared to wild-type (WT) but 3- and 15-fold lower catalytic efficiencies, respectively. However, mutants Y177A and Y177H became heat-labile at moderate temperatures. These results indicate that an aromatic residue (Tyr or Phe) is necessary for the substrate-binding pocket of SpG6PD1; Tyr with its hydroxyl group is preferred for enzymatic activity, whereas the more hydrophobic Phe is preferred for thermal stability. Substitutions of bulky Trp for Tyr or Phe at this position resulted in substantial loss of activity. Our study suggests that delicate adjustment of aromatic residues can regulate the activity and stability of psychrophilic G6PD isozymes involved in different metabolic pathways.
- Subjects :
- Protein Conformation, alpha-Helical
Stereochemistry
Phenylalanine
Biophysics
Gene Expression
Glucose-6-Phosphate
Dehydrogenase
Pentose phosphate pathway
Glucosephosphate Dehydrogenase
Biochemistry
Isozyme
Sphingomonas
Analytical Chemistry
Substrate Specificity
03 medical and health sciences
chemistry.chemical_compound
Bacterial Proteins
Aromatic amino acids
Glucose-6-phosphate dehydrogenase
Protein Interaction Domains and Motifs
Molecular Biology
030304 developmental biology
chemistry.chemical_classification
0303 health sciences
Binding Sites
biology
Sequence Homology, Amino Acid
030306 microbiology
Chemistry
Tryptophan
Active site
Hydrogen Bonding
Adaptation, Physiological
Recombinant Proteins
Cold Temperature
Molecular Docking Simulation
Metabolic pathway
Kinetics
Enzyme
Amino Acid Substitution
biology.protein
Biocatalysis
Mutagenesis, Site-Directed
Tyrosine
Protein Conformation, beta-Strand
Hydrophobic and Hydrophilic Interactions
Sequence Alignment
Protein Binding
Subjects
Details
- ISSN :
- 18781454
- Volume :
- 1869
- Issue :
- 1
- Database :
- OpenAIRE
- Journal :
- Biochimica et biophysica acta. Proteins and proteomics
- Accession number :
- edsair.doi.dedup.....4eb89ace0c41aaba4a2ebd7f1de02720