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Development of a set of SNP markers for population genetics of the red gorgonian (Paramuricea clavata), an emblematic species of the Mediterranean coralligenous
- Source :
- Conservation Genetics Resources, Conservation Genetics Resources, Springer, In press, ⟨10.1007/s12686-020-01139-7⟩, Conservation Genetics Resources, Springer, 2020, Conservation Genetics Resources, Springer, 2020, 12 (4), pp.521-523. ⟨10.1007/s12686-020-01139-7⟩
- Publication Year :
- 2020
- Publisher :
- Springer Science and Business Media LLC, 2020.
-
Abstract
- International audience; Transcriptome sequencing was used for the development of single nucleotide polymorphisms (SNP) for the red gorgonian (Paramuricea clavata). A total of 20,736 SNPs were identified, and 1718 had a coverage of over 100 reads. Of the 480 SNPs tested, 347 SNPs were successfully genotyped at 95 samples from the NW Mediterranean using a MassARRAY System. This set of markers will be of great value for population genetics and phylogeography.
- Subjects :
- 0106 biological sciences
0301 basic medicine
Mediterranean climate
MassARRAY
ved/biology.organism_classification_rank.species
[SDU.STU]Sciences of the Universe [physics]/Earth Sciences
Population genetics
Paramuricea clavata
Single-nucleotide polymorphism
Biology
010603 evolutionary biology
01 natural sciences
03 medical and health sciences
Snp markers
Genetics
SNP
Ecology, Evolution, Behavior and Systematics
ved/biology
biology.organism_classification
Single nucleotide polymorphism
Phylogeography
030104 developmental biology
Gorgonian
Evolutionary biology
[SDE]Environmental Sciences
Subjects
Details
- ISSN :
- 18777260 and 18777252
- Volume :
- 12
- Database :
- OpenAIRE
- Journal :
- Conservation Genetics Resources
- Accession number :
- edsair.doi.dedup.....4ce4712a188292addcb2f59d7caf1204