Supplemental Figure 2 from Mitochondrial Genomic Backgrounds Affect Nuclear DNA Methylation and Gene Expression

Supplemental Figure 2. Deduplication and alignment statistics. a. Bismark v0.10.1 was used for alignment and deduplication. Duplicates were discarded using deduplicate_bismark perl script. With total number of alignments analyzed (red), total number of duplicated alignments removed (green) and total count of de-duplicated sequences (blue). b. Total sequence pairs analyzed (yellow), number of paired-end alignments with a unique hit (green), sequence pairs with no alignment (light blue), sequence pairs that did not map (blue), sequence pairs that were discarded due to no genomic sequence extracted (pink)