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Publisher Correction: Nanopore sequencing reveals TACC2 locus complexity and diversity of isoforms transcribed from an intronic promoter
- Source :
- Scientific Reports, Vol 11, Iss 1, Pp 1-1 (2021), Scientific Reports
- Publication Year :
- 2021
- Publisher :
- Springer Science and Business Media LLC, 2021.
-
Abstract
- Gene expression is controlled at the transcriptional and post-transcriptional levels. The TACC2 gene was known to be associated with tumors but the control of its expression is unclear. We have reported that activity of the intronic promoter p10 of TACC2 in primary lesion of endometrial cancer is indicative of lymph node metastasis among a low-risk patient group. Here, we analyze the intronic promoter derived isoforms in JHUEM-1 endometrial cancer cells, and primary tissues of endometrial cancers and normal endometrium. Full-length cDNA amplicons are produced by long-range PCR and subjected to nanopore sequencing followed by computational error correction. We identify 16 stable, 4 variable, and 9 rare exons including 3 novel exons validated independently. All variable and rare exons reside N-terminally of the TACC domain and contribute to isoform variety. We found 240 isoforms as high-confidence, supported by more than 20 reads. The large number of isoforms produced from one minor promoter indicates the post-transcriptional complexity coupled with transcription at the TACC2 locus in cancer and normal cells.
- Subjects :
- Gene isoform
Science
media_common.quotation_subject
Locus (genetics)
Biology
Tumor Cells, Cultured
Humans
Protein Isoforms
RNA, Messenger
Promoter Regions, Genetic
media_common
Genetics
Multidisciplinary
Tumor Suppressor Proteins
TACC2
Exons
Publisher Correction
Introns
Endometrial Neoplasms
Alternative Splicing
Medicine
Female
Nanopore sequencing
Carrier Proteins
Diversity (politics)
Subjects
Details
- ISSN :
- 20452322
- Volume :
- 11
- Database :
- OpenAIRE
- Journal :
- Scientific Reports
- Accession number :
- edsair.doi.dedup.....4a90c6002193f92ece11ced2ffbec173
- Full Text :
- https://doi.org/10.1038/s41598-021-96196-9