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SugarSketcher: Quick and Intuitive Online Glycan Drawing
- Source :
- Molecules, Vol 23, Iss 12, p 3206 (2018), Molecules, Molecules, Vol. 23, No 12 (2018) P. 3206
- Publication Year :
- 2018
- Publisher :
- MDPI AG, 2018.
-
Abstract
- SugarSketcher is an intuitive and fast JavaScript interface module for online drawing of glycan structures in the popular Symbol Nomenclature for Glycans (SNFG) notation and exporting them to various commonly used formats encoding carbohydrate sequences (e.g., GlycoCT) or quality images (e.g., svg). It does not require a backend server or any specific browser plugins and can be integrated in any web glycoinformatics project. SugarSketcher allows drawing glycans both for glycobiologists and non-expert users. The “quick mode„ allows a newcomer to build up a glycan structure having only a limited knowledge in carbohydrate chemistry. The “normal mode„ integrates advanced options which enable glycobiologists to tailor complex carbohydrate structures. The source code is freely available on GitHub and glycoinformaticians are encouraged to participate in the development process while users are invited to test a prototype available on the ExPASY web-site and send feedback.
- Subjects :
- 0301 basic medicine
Carbohydrate
Source code
Computer science
Interface (Java)
media_common.quotation_subject
Scalable Vector Graphics
Pharmaceutical Science
Web Browser
JavaScript
computer.software_genre
Symbol (chemistry)
Analytical Chemistry
World Wide Web
lcsh:QD241-441
03 medical and health sciences
Structure-Activity Relationship
Mode (computer interface)
lcsh:Organic chemistry
Polysaccharides
ddc:570
Drug Discovery
Technical Note
Plug-in
Physical and Theoretical Chemistry
ddc:025.063
computer.programming_language
media_common
2D structure
030102 biochemistry & molecular biology
software
Organic Chemistry
Computational Biology
computer.file_format
030104 developmental biology
Chemistry (miscellaneous)
carbohydrate
Molecular Medicine
Glycoinformatics
computer
Software
SNFG notation
Subjects
Details
- Language :
- English
- ISSN :
- 14203049
- Volume :
- 23
- Issue :
- 12
- Database :
- OpenAIRE
- Journal :
- Molecules
- Accession number :
- edsair.doi.dedup.....49f22faad7815857ce6e612f22533b6a