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Ab Initio Molecular Dynamics Simulations and g-Tensor Calculations of Aqueous Benzosemiquinone Radical Anion: Effects of Regular and 'T-Stacked' Hydrogen Bonds
- Source :
- Journal of the American Chemical Society. 126:9854-9861
- Publication Year :
- 2004
- Publisher :
- American Chemical Society (ACS), 2004.
-
Abstract
- Car-Parrinello molecular dynamics (CP-MD) simulations of the benzosemiquinone radical anion in aqueous solution have been performed at ambient conditions. Analysis of the trajectory shows not only extensive hydrogen bonding to the carbonyl oxygen atoms (ca. 4-5.6 water molecules depending on distance criteria), but also relatively long-lived "T-stacked" hydrogen bonds to the semiquinone pi-system. These results are discussed in the context of recent findings on semiquinone-protein interactions in photosynthetic reaction centers, and of EPR and vibration spectroscopical data for the aqueous system. Snapshots from the CP-MD trajectory are used for the first quantum chemical analyses of dynamical effects on electronic g-tensors, using cluster models and a recently developed density functional method. In particular, the effects of intermolecular hydrogen-bond dynamics on the g-tensor components are examined, in comparison with recent EPR and ENDOR studies.
- Subjects :
- Models, Molecular
Semiquinone
Chemistry
Hydrogen bond
Intermolecular force
Electron Spin Resonance Spectroscopy
Hydrogen Bonding
General Chemistry
Electronic structure
Biochemistry
Catalysis
law.invention
Molecular dynamics
Colloid and Surface Chemistry
Models, Chemical
Ab initio quantum chemistry methods
law
Benzoquinones
Molecule
Physical chemistry
Computer Simulation
Electron paramagnetic resonance
Subjects
Details
- ISSN :
- 15205126 and 00027863
- Volume :
- 126
- Database :
- OpenAIRE
- Journal :
- Journal of the American Chemical Society
- Accession number :
- edsair.doi.dedup.....46e5adbe97464c8f0dbdab31390bd037
- Full Text :
- https://doi.org/10.1021/ja0485053