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Magnetic Resonance Imaging Sequence Identification Using a Metadata Learning Approach

Authors :
Shuai Liang
Derek Beaton
Stephen R. Arnott
Tom Gee
Mojdeh Zamyadi
Robert Bartha
Sean Symons
Glenda M. MacQueen
Stefanie Hassel
Jason P. Lerch
Evdokia Anagnostou
Raymond W. Lam
Benicio N. Frey
Roumen Milev
Daniel J. Müller
Sidney H. Kennedy
Christopher J. M. Scott
The ONDRI Investigators
Stephen C. Strother
Angela Troyer
Anthony E. Lang
Barry Greenberg
Chris Hudson
Dale Corbett
David A. Grimes
David G. Munoz
Douglas P. Munoz
Elizabeth Finger
J. B. Orange
Lorne Zinman
Manuel Montero-Odasso
Maria Carmela Tartaglia
Mario Masellis
Michael Borrie
Michael J. Strong
Morris Freedman
Paula M. McLaughlin
Richard H. Swartz
Robert A. Hegele
Sandra E. Black
William E. McIlroy
Source :
Frontiers in Neuroinformatics, Vol 15 (2021), Medical Biophysics Publications, Frontiers in Neuroinformatics
Publication Year :
2021
Publisher :
Frontiers Media SA, 2021.

Abstract

Despite the wide application of the magnetic resonance imaging (MRI) technique, there are no widely used standards on naming and describing MRI sequences. The absence of consistent naming conventions presents a major challenge in automating image processing since most MRI software require a priori knowledge of the type of the MRI sequences to be processed. This issue becomes increasingly critical with the current efforts toward open-sharing of MRI data in the neuroscience community. This manuscript reports an MRI sequence detection method using imaging metadata and a supervised machine learning technique. Three datasets from the Brain Center for Ontario Data Exploration (Brain-CODE) data platform, each involving MRI data from multiple research institutes, are used to build and test our model. The preliminary results show that a random forest model can be trained to accurately identify MRI sequence types, and to recognize MRI scans that do not belong to any of the known sequence types. Therefore the proposed approach can be used to automate processing of MRI data that involves a large number of variations in sequence names, and to help standardize sequence naming in ongoing data collections. This study highlights the potential of the machine learning approaches in helping manage health data.

Details

ISSN :
16625196
Volume :
15
Database :
OpenAIRE
Journal :
Frontiers in Neuroinformatics
Accession number :
edsair.doi.dedup.....40b1bb18d2dedb5314b559580a39b326