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Data from: Assessment of imputation from low-pass sequencing to predict merit of beef steers
- Publication Year :
- 2020
- Publisher :
- Zenodo, 2020.
-
Abstract
- Sup1.tsv:Tab separated text list of animals in imputation reference, containing ID, SRR Accessions, Source, Breed and number of downsampled progeny examined in this study. Sup2.vcf.gz:VCF-formatted text containing snpEff annotation of variants imputed from low-pass sequence. Sup3.tsv:Tab separated text summarizing number of variants, low-confidence variants and variant spacing in 1 Mb intervals. Sup4.tsv: Tab separated text with correlations between molecular breeding values with SNP effects applied to genotypes imputed from low-pass sequence or SNP arrays. steerworkflow.pdf: Diagram depicting processes to obtain imputedgenotypes, (G)EBV and MBV of the study steers
- Subjects :
- beef cattle
imputation
sequence
genomic prediction
Subjects
Details
- Database :
- OpenAIRE
- Accession number :
- edsair.doi.dedup.....3ecab367c5959941bd0a78531c0a37aa
- Full Text :
- https://doi.org/10.5281/zenodo.4057084