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Data from: Assessment of imputation from low-pass sequencing to predict merit of beef steers

Authors :
Snelling, Warren M
Hoff, Jesse L
Li, Jeremiah H
Kuehn, Larry A
Keel, Brittney N
Lindholm-Perry, Amanda K
Pickrell, Joseph K
Publication Year :
2020
Publisher :
Zenodo, 2020.

Abstract

Sup1.tsv:Tab separated text list of animals in imputation reference, containing ID, SRR Accessions, Source, Breed and number of downsampled progeny examined in this study. Sup2.vcf.gz:VCF-formatted text containing snpEff annotation of variants imputed from low-pass sequence. Sup3.tsv:Tab separated text summarizing number of variants, low-confidence variants and variant spacing in 1 Mb intervals. Sup4.tsv: Tab separated text with correlations between molecular breeding values with SNP effects applied to genotypes imputed from low-pass sequence or SNP arrays. steerworkflow.pdf: Diagram depicting processes to obtain imputedgenotypes, (G)EBV and MBV of the study steers

Details

Database :
OpenAIRE
Accession number :
edsair.doi.dedup.....3ecab367c5959941bd0a78531c0a37aa
Full Text :
https://doi.org/10.5281/zenodo.4057084