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Evolutionary relationships within the Phytophthora cactorum species complex in Europe
- Source :
- Fungal Biology. 120:836-851
- Publication Year :
- 2016
- Publisher :
- Elsevier BV, 2016.
-
Abstract
- The Phytophthora cactorum species complex in Europe is composed of P. cactorum, Phytophthora hedraiandra, and a hybrid species Phytophthora × serendipita. Evolutionary analyses using the amplified fragment length polymorphism (AFLP) method were carried out on 133 isolates from 19 countries. The AFLP data were complemented by sequence analysis of three genes (ITS region of ribosomal RNA gene, phenolic acid decarboxylase – Pheca I, and Cytochrome oxidase – Cox I), morphometric analysis and cardinal temperature data. The high proportion of clonal genotypes, low gene flow among groups, which was defined by the structure analysis, and low Nei's gene diversity confirms the homothallic life cycle of the groups. On the other hand, the ITS, Cox I and Pheca I sequence data support occasional hybridization between species. The structure K = 5 grouping revealed two groups of hybrid origin (C2 and F). While the C2 group resembles P. × serendipita, the F group includes Finnish isolates characterized by high oogonial abortion rates and slow growth. The morphological characters routinely used in identification of Phytophthora species are not useful for delimitation of species from the P. cactorum complex. Therefore, we discuss the status of P. hedraiandra as a separate species. The epitypification of P. cactorum is proposed.
- Subjects :
- Phytophthora
0106 biological sciences
Species complex
Genotype
Phytophthora cactorum
Sequence analysis
010603 evolutionary biology
01 natural sciences
Gene flow
Evolution, Molecular
Fungal Proteins
Phylogenetics
DNA, Ribosomal Spacer
Botany
Genetics
Cluster Analysis
Amplified Fragment Length Polymorphism Analysis
DNA, Fungal
Phylogeny
Ecology, Evolution, Behavior and Systematics
Hybrid
biology
food and beverages
Sequence Analysis, DNA
biology.organism_classification
Europe
Infectious Diseases
Amplified fragment length polymorphism
010606 plant biology & botany
Subjects
Details
- ISSN :
- 18786146
- Volume :
- 120
- Database :
- OpenAIRE
- Journal :
- Fungal Biology
- Accession number :
- edsair.doi.dedup.....3eb1e534bc99e606574c72a077dd660d
- Full Text :
- https://doi.org/10.1016/j.funbio.2016.03.006