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Compact genome of the Antarctic midge is likely an adaptation to an extreme environment

Authors :
Nicholas M. Teets
Richard E. Lee
J. Spencer Johnston
Carlos Bustamante
Joanna L. Kelley
Justin T. Peyton
Muh-Ching Yee
Anna-Sophie Fiston-Lavier
David L. Denlinger
Department of Genetics [Stanford]
Stanford Medicine
Stanford University-Stanford University
School of Biological Sciences
Washington State University (WSU)
Ohio State University [Columbus] (OSU)
Stanford University
Institut des Sciences de l'Evolution de Montpellier (UMR ISEM)
École pratique des hautes études (EPHE)
Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Centre National de la Recherche Scientifique (CNRS)-Institut de recherche pour le développement [IRD] : UR226
University of Florida [Gainesville] (UF)
Department of Plant Biology [Carnegie] (DPB)
Carnegie Institution for Science [Washington]
Texas A&M University [College Station]
Miami University [Ohio] (MU)
Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École Pratique des Hautes Études (EPHE)
Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Institut de recherche pour le développement [IRD] : UR226-Centre National de la Recherche Scientifique (CNRS)
Carnegie Institution for Science
Source :
Nature Communications, Nature Communications, Nature Publishing Group, 2014, 5, pp.4611. ⟨10.1038/ncomms5611⟩, Nature Communications, 2014, 5, pp.4611. ⟨10.1038/ncomms5611⟩, Nature communications, vol 5, iss 1
Publication Year :
2014
Publisher :
Springer Science and Business Media LLC, 2014.

Abstract

The midge, Belgica antarctica, is the only insect endemic to Antarctica, and thus it offers a powerful model for probing responses to extreme temperatures, freeze tolerance, dehydration, osmotic stress, ultraviolet radiation and other forms of environmental stress. Here we present the first genome assembly of an extremophile, the first dipteran in the family Chironomidae, and the first Antarctic eukaryote to be sequenced. At 99 megabases, B. antarctica has the smallest insect genome sequenced thus far. Although it has a similar number of genes as other Diptera, the midge genome has very low repeat density and a reduction in intron length. Environmental extremes appear to constrain genome architecture, not gene content. The few transposable elements present are mainly ancient, inactive retroelements. An abundance of genes associated with development, regulation of metabolism and responses to external stimuli may reflect adaptations for surviving in this harsh environment.<br />The Antarctic midge, Belgica antarctica, is the only insect endemic to Antarctica. Here, the authors sequence the B. antarctica genome, the smallest insect genome yet reported, and suggest that genes involved in development, metabolism and stimuli response may have had a role in how this insect adapted to survive in such a harsh environment.

Details

ISSN :
20411723
Volume :
5
Database :
OpenAIRE
Journal :
Nature Communications
Accession number :
edsair.doi.dedup.....3d8c4c7f07dff93b341e1fae48f94813
Full Text :
https://doi.org/10.1038/ncomms5611