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A Kriging-Based Approach to Autonomous Experimentation with Applications to X-Ray Scattering
- Source :
- Scientific Reports, Scientific reports, vol 9, iss 1, Scientific Reports, Vol 9, Iss 1, Pp 1-19 (2019)
- Publication Year :
- 2019
- Publisher :
- Nature Publishing Group UK, 2019.
-
Abstract
- Modern scientific instruments are acquiring data at ever-increasing rates, leading to an exponential increase in the size of data sets. Taking full advantage of these acquisition rates will require corresponding advancements in the speed and efficiency of data analytics and experimental control. A significant step forward would come from automatic decision-making methods that enable scientific instruments to autonomously explore scientific problems—that is, to intelligently explore parameter spaces without human intervention, selecting high-value measurements to perform based on the continually growing experimental data set. Here, we develop such an autonomous decision-making algorithm that is physics-agnostic, generalizable, and operates in an abstract multi-dimensional parameter space. Our approach relies on constructing a surrogate model that fits and interpolates the available experimental data, and is continuously refined as more data is gathered. The distribution and correlation of the data is used to generate a corresponding uncertainty across the surrogate model. By suggesting follow-up measurements in regions of greatest uncertainty, the algorithm maximally increases knowledge with each added measurement. This procedure is applied repeatedly, with the algorithm iteratively reducing model error and thus efficiently sampling the parameter space with each new measurement that it requests. We validate the method using synthetic data, demonstrating that it converges to faithful replica of test functions more rapidly than competing methods, and demonstrate the viability of the approach in an experimental context by using it to direct autonomous small-angle (SAXS) and grazing-incidence small-angle (GISAXS) x-ray scattering experiments.
- Subjects :
- 0301 basic medicine
Computer science
lcsh:Medicine
Context (language use)
Bioengineering
Parameter space
Synthetic data
Article
03 medical and health sciences
0302 clinical medicine
Surrogate model
Kriging
lcsh:Science
Multidisciplinary
lcsh:R
Computational science
Experimental data
Sampling (statistics)
Scientific data
Applied mathematics
Other Physical Sciences
Data set
030104 developmental biology
Design, synthesis and processing
Data analysis
Errors-in-variables models
lcsh:Q
Biochemistry and Cell Biology
Generic health relevance
Algorithm
030217 neurology & neurosurgery
Software
Subjects
Details
- Language :
- English
- ISSN :
- 20452322
- Volume :
- 9
- Database :
- OpenAIRE
- Journal :
- Scientific Reports
- Accession number :
- edsair.doi.dedup.....3cf5a4af19bb30c2868157778a07cd43