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A reference library for Canadian invertebrates with 1.5 million barcodes, voucher specimens, and DNA samples

Authors :
Dirk Steinke
Renee Miskie
Jeremy R deWaard
Adriana E. Radulovici
Angela C Telfer
Ramya Manjunath
Valerie Levesque-Beaudin
Claudia Steinke
Paul D. N. Hebert
Norm Monkhouse
Liuqiong Lu
Sujeevan Ratnasingham
Kara K S Layton
Evgeny Zakharov
Kate Perez
Kyrylo Bessonov
Jayme E Sones
Connor P Warne
Natalia Ivanova
Jaclyn McKeown
Monica R Young
Arusyak Abrahamyan
Crystal N Sobel
Megan A. Milton
Stephanie L. deWaard
Alex V. Borisenko
Gergin Blagoev
Chris Ho
Mikko Pentinsaari
Suresh Naik
Nadya Nikolova
Sean W. J. Prosser
Source :
Scientific Data, Vol 6, Iss 1, Pp 1-12 (2019), Scientific Data
Publication Year :
2019
Publisher :
Nature Publishing Group, 2019.

Abstract

The reliable taxonomic identification of organisms through DNA sequence data requires a well parameterized library of curated reference sequences. However, it is estimated that just 15% of described animal species are represented in public sequence repositories. To begin to address this deficiency, we provide DNA barcodes for 1,500,003 animal specimens collected from 23 terrestrial and aquatic ecozones at sites across Canada, a nation that comprises 7% of the planet’s land surface. In total, 14 phyla, 43 classes, 163 orders, 1123 families, 6186 genera, and 64,264 Barcode Index Numbers (BINs; a proxy for species) are represented. Species-level taxonomy was available for 38% of the specimens, but higher proportions were assigned to a genus (69.5%) and a family (99.9%). Voucher specimens and DNA extracts are archived at the Centre for Biodiversity Genomics where they are available for further research. The corresponding sequence and taxonomic data can be accessed through the Barcode of Life Data System, GenBank, the Global Biodiversity Information Facility, and the Global Genome Biodiversity Network Data Portal.<br />Measurement(s)DNA • digital imagingTechnology Type(s)taxonomic diversity assessment by targeted gene survey • digital curationFactor Type(s)species • geographic location • habitatSample Characteristic - OrganismMetazoaSample Characteristic - Environmentterrestrial biome • freshwater biome • marine biomeSample Characteristic - LocationCanada Machine-accessible metadata file describing the reported data: 10.6084/m9.figshare.10298354

Details

Language :
English
ISSN :
20524463
Volume :
6
Issue :
1
Database :
OpenAIRE
Journal :
Scientific Data
Accession number :
edsair.doi.dedup.....3c1beed450e35d22adf5cc297d0cccb1
Full Text :
https://doi.org/10.1038/s41597-019-0320-2