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A reference library for Canadian invertebrates with 1.5 million barcodes, voucher specimens, and DNA samples
- Source :
- Scientific Data, Vol 6, Iss 1, Pp 1-12 (2019), Scientific Data
- Publication Year :
- 2019
- Publisher :
- Nature Publishing Group, 2019.
-
Abstract
- The reliable taxonomic identification of organisms through DNA sequence data requires a well parameterized library of curated reference sequences. However, it is estimated that just 15% of described animal species are represented in public sequence repositories. To begin to address this deficiency, we provide DNA barcodes for 1,500,003 animal specimens collected from 23 terrestrial and aquatic ecozones at sites across Canada, a nation that comprises 7% of the planet’s land surface. In total, 14 phyla, 43 classes, 163 orders, 1123 families, 6186 genera, and 64,264 Barcode Index Numbers (BINs; a proxy for species) are represented. Species-level taxonomy was available for 38% of the specimens, but higher proportions were assigned to a genus (69.5%) and a family (99.9%). Voucher specimens and DNA extracts are archived at the Centre for Biodiversity Genomics where they are available for further research. The corresponding sequence and taxonomic data can be accessed through the Barcode of Life Data System, GenBank, the Global Biodiversity Information Facility, and the Global Genome Biodiversity Network Data Portal.<br />Measurement(s)DNA • digital imagingTechnology Type(s)taxonomic diversity assessment by targeted gene survey • digital curationFactor Type(s)species • geographic location • habitatSample Characteristic - OrganismMetazoaSample Characteristic - Environmentterrestrial biome • freshwater biome • marine biomeSample Characteristic - LocationCanada Machine-accessible metadata file describing the reported data: 10.6084/m9.figshare.10298354
- Subjects :
- 0106 biological sciences
Statistics and Probability
Canada
Data Descriptor
Biodiversity
Genomics
Library and Information Sciences
Barcode
010603 evolutionary biology
01 natural sciences
DNA sequencing
law.invention
Education
03 medical and health sciences
Genus
law
Animals
DNA Barcoding, Taxonomic
lcsh:Science
030304 developmental biology
Taxonomy
0303 health sciences
15. Life on land
Invertebrates
Computer Science Applications
Geography
Evolutionary biology
GenBank
Next-generation sequencing
Taxonomy (biology)
lcsh:Q
Statistics, Probability and Uncertainty
Molecular ecology
Entomology
Global biodiversity
Information Systems
Subjects
Details
- Language :
- English
- ISSN :
- 20524463
- Volume :
- 6
- Issue :
- 1
- Database :
- OpenAIRE
- Journal :
- Scientific Data
- Accession number :
- edsair.doi.dedup.....3c1beed450e35d22adf5cc297d0cccb1
- Full Text :
- https://doi.org/10.1038/s41597-019-0320-2