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Biochemical characterization and mutational studies of the 8-oxoguanine DNA glycosylase from the hyperthermophilic and radioresistant archaeon Thermococcus gammatolerans
- Source :
- Applied Microbiology and Biotechnology, Applied Microbiology and Biotechnology, Springer Verlag, 2019, ⟨10.1007/s00253-019-10031-w⟩
- Publication Year :
- 2019
- Publisher :
- Springer Science and Business Media LLC, 2019.
-
Abstract
- 8-oxoguanine (GO) is a major lesion found in DNA that arises from guanine oxidation. The hyperthermophilic and radioresistant euryarchaeon Thermococcus gammatolerans encodes an archaeal GO DNA glycosylase (Tg-AGOG). Here, we characterized biochemically Tg-AGOG and probed its GO removal mechanism by mutational studies. Tg-AGOG can remove GO from DNA at high temperature through a β-elimination reaction. The enzyme displays an optimal temperature, ca.85–95 °C, and an optimal pH, ca.7.0–8.5. In addition, Tg-AGOG activity is independent on a divalent metal ion. However, both Co2+ and Cu2+ inhibit its activity. The enzyme activity is also inhibited by NaCl. Furthermore, Tg-AGOG specifically cleaves GO-containing dsDNA in the order: GO:C, GO:T, GO:A, and GO:G. Moreover, the temperature dependence of cleavage rates of the enzyme was determined, and from this, the activation energy for GO removal from DNA was first estimated to be 16.9 ± 0.9 kcal/mol. In comparison with the wild-type Tg-AGOG, the R197A mutant has a reduced cleavage activity for GO-containing DNA, whereas both the P193A and F167A mutants exhibit similar cleavage activities for GO-containing DNA. While the mutations of P193 and F167 to Ala lead to increased binding, the mutation of R197 to Ala had no significant effect on binding. These observations suggest that residue R197 is involved in catalysis, and residues P193 and F167 are flexible for conformational change.
- Subjects :
- Guanine
DNA Mutational Analysis
Mutant
Enzyme Activators
Cleavage (embryo)
Applied Microbiology and Biotechnology
DNA Glycosylases
03 medical and health sciences
chemistry.chemical_compound
Enzyme Stability
Enzyme Inhibitors
ComputingMilieux_MISCELLANEOUS
030304 developmental biology
chemistry.chemical_classification
0303 health sciences
biology
030306 microbiology
Chemistry
Temperature
Thermococcus gammatolerans
[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology
General Medicine
Base excision repair
Hydrogen-Ion Concentration
biology.organism_classification
Thermococcus
Enzyme
Biochemistry
DNA glycosylase
Mutant Proteins
DNA
Biotechnology
Subjects
Details
- ISSN :
- 14320614 and 01757598
- Volume :
- 103
- Database :
- OpenAIRE
- Journal :
- Applied Microbiology and Biotechnology
- Accession number :
- edsair.doi.dedup.....3bf89e498bb3335c656ea7dab1893cac
- Full Text :
- https://doi.org/10.1007/s00253-019-10031-w