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Analyses of 202 plastid genomes elucidate the phylogeny of Solanum section Petota
- Source :
- Scientific Reports, Scientific Reports, Nature Publishing Group, 2019, 9, pp.4454. ⟨10.1038/s41598-019-40790-5⟩, Scientific Reports, 2019, 9, pp.4454. ⟨10.1038/s41598-019-40790-5⟩, Scientific Reports, Vol 9, Iss 1, Pp 1-7 (2019)
- Publication Year :
- 2019
- Publisher :
- Nature Publishing Group UK, 2019.
-
Abstract
- Our paper analyzes full plastid DNA sequence data of 202 wild and cultivated diploid potatoes, Solanum section Petota, to explore its phylogenetic utility compared to prior analyses of the same accessions using genome-wide nuclear SNPs, and plastid DNA restriction site data. The present plastid analysis discovered the same major clades as the nuclear data but with some substantial differences in topology within the clades. The considerably larger plastid and nuclear data sets add phylogenetic resolution within the prior plastid DNA restriction site data, highlight plastid/nuclear incongruence that supports hypotheses of hybridization/introgression to help explain the taxonomic difficulty in the section.
- Subjects :
- 0301 basic medicine
Plant domestication
Genome, Plastid
Introgression
lcsh:Medicine
Biology
[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy
Solanum
Genome
Polymorphism, Single Nucleotide
DNA sequencing
Article
[SDV.GEN.GPL]Life Sciences [q-bio]/Genetics/Plants genetics
03 medical and health sciences
0302 clinical medicine
Phylogenetics
Genetic variation
Plastid
Clade
lcsh:Science
Phylogeny
Multidisciplinary
Phylogenetic tree
lcsh:R
fungi
food and beverages
Genetic Variation
Diploidy
030104 developmental biology
Evolutionary biology
lcsh:Q
030217 neurology & neurosurgery
Subjects
Details
- Language :
- English
- ISSN :
- 20452322
- Volume :
- 9
- Database :
- OpenAIRE
- Journal :
- Scientific Reports
- Accession number :
- edsair.doi.dedup.....3adb4f73a52999ece53c7cd904513a00