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Coronapp : A web application to annotate and monitor SARS‐CoV‐2 mutations
- Source :
- Journal of Medical Virology
- Publication Year :
- 2020
- Publisher :
- Wiley, 2020.
-
Abstract
- The avalanche of genomic data generated from the severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) virus requires the development of tools to detect and monitor its mutations across the world. Here, we present a webtool, coronapp, dedicated to easily processing user‐provided SARS‐CoV‐2 genomic sequences and visualizing the current worldwide status of SARS‐CoV‐2 mutations. The webtool allows users to highlight mutations and categorize them by frequency, country, genomic location and effect on protein sequences, and to monitor their presence in the population over time. The tool is available at http://giorgilab.unibo.it/coronannotator/ for the annotation of user‐provided sequences. The full code is freely shared at https://github.com/federicogiorgi/giorgilab/tree/master/coronannotator.
- Subjects :
- 2019-20 coronavirus outbreak
Coronavirus disease 2019 (COVID-19)
Computer science
Short Communication
Genomic data
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Population
Short Communications
Genome, Viral
Computational biology
SARS‐CoV‐2
03 medical and health sciences
Annotation
0302 clinical medicine
COVID‐19
Virology
Humans
Web application
genetics
Amino Acid Sequence
030212 general & internal medicine
education
education.field_of_study
SARS-CoV-2
business.industry
COVID-19
Genomics
web application
mutations
Infectious Diseases
030211 gastroenterology & hepatology
genetic
mutation
business
Subjects
Details
- Language :
- English
- ISSN :
- 10969071 and 01466615
- Database :
- OpenAIRE
- Journal :
- Journal of Medical Virology
- Accession number :
- edsair.doi.dedup.....3a74ab99b15f5b4a8ec6431767bb88ed
- Full Text :
- https://doi.org/10.1002/jmv.26678