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A complete genome assembly of Glaciecola mesophila sp. nov. sequenced by using BIGIS-4 sequencer system
- Source :
- Science China Life Sciences. 54:835-840
- Publication Year :
- 2011
- Publisher :
- Springer Science and Business Media LLC, 2011.
-
Abstract
- Using a pyrosequencing-based custom-made sequencer BIGIS-4, we sequenced a Gram-negative bacterium Glaciecola mesophila sp. nov. (Gmn) isolated from marine invertebrate specimens. We generated 152043 sequencing reads with a mean high-quality length of 406 bp, and assembled them using the BIGIS-4 post-processing module. No systematic low-quality data was detected beyond expected homopolymer-derived errors. The assembled Gmn genome is 5144318 bp in length and harbors 4303 annotated genes. A large number of metabolic genes correspond to various nutrients from surface marine invertebrates. Its abundant cold-tolerant and cellular signaling and related genes reveal a fundamental adaptation to low-temperature marine environment.
- Subjects :
- DNA, Bacterial
Genetics
Agricultural and Biological Sciences(all)
Biochemistry, Genetics and Molecular Biology(all)
Ecology
Sequence assembly
Marine invertebrates
Biology
biology.organism_classification
Genome
General Biochemistry, Genetics and Molecular Biology
Environmental Science(all)
Gram-Negative Bacteria
Pyrosequencing
Glaciecola mesophila
Alteromonas macleodii
General Agricultural and Biological Sciences
Gene
Genome, Bacterial
General Environmental Science
Subjects
Details
- ISSN :
- 18691889 and 16747305
- Volume :
- 54
- Database :
- OpenAIRE
- Journal :
- Science China Life Sciences
- Accession number :
- edsair.doi.dedup.....38f1816c3aa0d1bdad4f726c9ef4c502