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A complete genome assembly of Glaciecola mesophila sp. nov. sequenced by using BIGIS-4 sequencer system

Authors :
Lina Yuan
Yude Yu
Jun Yu
Liu Guiming
Mingjing Teng
Liang Wang
Chu Yanan
Weijing Han
Yuntao Li
Xiaoguang Zhou
Dan Yu
Xumin Wang
Lufeng Ren
Yong Yu
Source :
Science China Life Sciences. 54:835-840
Publication Year :
2011
Publisher :
Springer Science and Business Media LLC, 2011.

Abstract

Using a pyrosequencing-based custom-made sequencer BIGIS-4, we sequenced a Gram-negative bacterium Glaciecola mesophila sp. nov. (Gmn) isolated from marine invertebrate specimens. We generated 152043 sequencing reads with a mean high-quality length of 406 bp, and assembled them using the BIGIS-4 post-processing module. No systematic low-quality data was detected beyond expected homopolymer-derived errors. The assembled Gmn genome is 5144318 bp in length and harbors 4303 annotated genes. A large number of metabolic genes correspond to various nutrients from surface marine invertebrates. Its abundant cold-tolerant and cellular signaling and related genes reveal a fundamental adaptation to low-temperature marine environment.

Details

ISSN :
18691889 and 16747305
Volume :
54
Database :
OpenAIRE
Journal :
Science China Life Sciences
Accession number :
edsair.doi.dedup.....38f1816c3aa0d1bdad4f726c9ef4c502