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Statistical image processing quantifies the changes in cytoplasmic texture associated with aging in Caenorhabditis elegans oocytes
- Source :
- BMC Bioinformatics, BMC Bioinformatics, Vol 22, Iss 1, Pp 1-21 (2021)
- Publication Year :
- 2021
- Publisher :
- Springer Science and Business Media LLC, 2021.
-
Abstract
- BackgroundOocyte quality decreases with aging, thereby increasing errors in fertilization, chromosome segregation, and embryonic cleavage. Oocyte appearance also changes with aging, suggesting a functional relationship between oocyte quality and appearance. However, no methods are available to objectively quantify age-associated changes in oocyte appearance.ResultsWe show that statistical image processing of Nomarski differential interference contrast microscopy images can be used to quantify age-associated changes in oocyte appearance in the nematodeCaenorhabditis elegans. Max–min value (mean difference between the maximum and minimum intensities within each moving window) quantitatively characterized the difference in oocyte cytoplasmic texture between 1- and 3-day-old adults (Day 1 and Day 3 oocytes, respectively). With an appropriate parameter set, the gray level co-occurrence matrix (GLCM)-based texture featureCorrelation(COR) more sensitively characterized this difference than the Max–min Value. Manipulating the smoothness of and/or adding irregular structures to the cytoplasmic texture of Day 1 oocyte images reproduced the difference in Max–min Value but not in COR between Day 1 and Day 3 oocytes. Increasing the size of granules in synthetic images recapitulated the age-associated changes in COR. Manual measurements validated that the cytoplasmic granules in oocytes become larger with aging.ConclusionsThe Max–min value and COR objectively quantify age-related changes inC. elegansoocyte in Nomarski DIC microscopy images. Our methods provide new opportunities for understanding the mechanism underlying oocyte aging.
- Subjects :
- Aging
Oocyte aging
Statistical image processing
Image processing
Matrix (biology)
lcsh:Computer applications to medicine. Medical informatics
Biochemistry
Texture (geology)
Image texture analysis
03 medical and health sciences
0302 clinical medicine
Human fertilization
Gray level co-occurrence matrix
Structural Biology
Chromosome Segregation
medicine
Animals
Nomarski DIC microscopy
Caenorhabditis elegans Proteins
Caenorhabditis elegans
lcsh:QH301-705.5
Molecular Biology
030304 developmental biology
0303 health sciences
Embryonic cleavage
biology
Applied Mathematics
Oocyte
biology.organism_classification
Computer Science Applications
Cell biology
medicine.anatomical_structure
lcsh:Biology (General)
Differential interference contrast microscopy
Oocytes
lcsh:R858-859.7
030217 neurology & neurosurgery
Research Article
Subjects
Details
- ISSN :
- 14712105
- Volume :
- 22
- Database :
- OpenAIRE
- Journal :
- BMC Bioinformatics
- Accession number :
- edsair.doi.dedup.....37019a4c993c42cf30d2daca8c482f4d