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CompRet: a comprehensive recommendation framework for chemical synthesis planning with algorithmic enumeration
- Source :
- Journal of Cheminformatics, Journal of Cheminformatics, Vol 12, Iss 1, Pp 1-14 (2020)
- Publication Year :
- 2020
-
Abstract
- In computer-assisted synthesis planning (CASP) programs, providing as many chemical synthetic routes as possible is essential for considering optimal and alternative routes in a chemical reaction network. As the majority of CASP programs have been designed to provide one or a few optimal routes, it is likely that the desired one will not be included. To avoid this, an exact algorithm that lists possible synthetic routes within the chemical reaction network is required, alongside a recommendation of synthetic routes that meet specified criteria based on the chemist’s objectives. Herein, we propose a chemical-reaction-network-based synthetic route recommendation framework called “CompRet” with a mathematically guaranteed enumeration algorithm. In a preliminary experiment, CompRet was shown to successfully provide alternative routes for a known antihistaminic drug, cetirizine. CompRet is expected to promote desirable enumeration-based chemical synthesis searches and aid the development of an interactive CASP framework for chemists.
- Subjects :
- 0301 basic medicine
Theoretical computer science
Enumeration
Computer science
Enumeration algorithm
Library and Information Sciences
Mathematical proof
Machine learning
computer.software_genre
01 natural sciences
Chemical synthesis
lcsh:Chemistry
Computer-assisted synthesis planning
03 medical and health sciences
Search algorithm
Physical and Theoretical Chemistry
CASP
Retrosynthetic analysis
lcsh:T58.5-58.64
lcsh:Information technology
business.industry
Retosynthesis
Preliminary Communication
Computer Graphics and Computer-Aided Design
0104 chemical sciences
Computer Science Applications
010404 medicinal & biomolecular chemistry
030104 developmental biology
Exact algorithm
lcsh:QD1-999
Artificial intelligence
business
computer
Subjects
Details
- ISSN :
- 17582946
- Volume :
- 12
- Issue :
- 1
- Database :
- OpenAIRE
- Journal :
- Journal of cheminformatics
- Accession number :
- edsair.doi.dedup.....36a74103a2b828389d8ec8fe37276189