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Molecular characterization of lung adenocarcinoma: A potential four–long noncoding RNA prognostic signature
- Source :
- Journal of Cellular Biochemistry. 120:705-714
- Publication Year :
- 2018
- Publisher :
- Wiley, 2018.
-
Abstract
- Background Lung adenocarcinoma (LUAD), mainly originated in lung glandular cells, is the most frequent pathological type of lung cancer and the 5-year survival rate of LUAD patients is still very low. Therefore, we aim to identify a long noncoding RNA (lncRNA)-related signature as the sensitive and novel prognostic biomarkers. Methods The associations between survival outcome and the intersection of lncRNAs were obtained from The Cancer Genome Atlas (TCGA) database. By the univariate and multivariate Cox analyses, key lncRNAs were identified to construct the prognostic model. The model was estimated by survival analysis and receiver operating characteristic curve, and verified by the Kaplan-Meier (K-M) plotter and quantitative reverse-transcription polymerase chain reaction (qRT-PCR). Functional enrichment analysis was also performed. Results A four-lncRNA signature (CEBPA-AS1, GVINP1, MIR31HG, and RAET1K) was developed after Cox analysis. The power of the four-lncRNA prognostic signature was effective in the TCGA database. The results from by the K-M plotter and qRT-PCR validation were consistent with our TCGA bioinformatics results. Furthermore, Gene Ontology and pathway analysis revealed the tumorigenic and prognostic function of the four lncRNAs. Conclusions By mining the TCGA data, we built a four-lncRNA signature, which could effectively predict prognosis of LUAD. In the future, an independent cohort is needed to validate our findings. Impact The four-lncRNA signature could become potential prognostic indicator of LUAD in the future.
- Subjects :
- Male
0301 basic medicine
Lung Neoplasms
Down-Regulation
Adenocarcinoma of Lung
Kaplan-Meier Estimate
Computational biology
Biology
Biochemistry
03 medical and health sciences
0302 clinical medicine
Databases, Genetic
Biomarkers, Tumor
medicine
Humans
Lung cancer
Molecular Biology
Survival rate
Survival analysis
Aged
Neoplasm Staging
Lung
Receiver operating characteristic
Prognostic signature
Cell Biology
Middle Aged
Prognosis
medicine.disease
Long non-coding RNA
Gene Expression Regulation, Neoplastic
Survival Rate
030104 developmental biology
medicine.anatomical_structure
ROC Curve
030220 oncology & carcinogenesis
Multivariate Analysis
Adenocarcinoma
Female
RNA, Long Noncoding
Transcriptome
Subjects
Details
- ISSN :
- 10974644 and 07302312
- Volume :
- 120
- Database :
- OpenAIRE
- Journal :
- Journal of Cellular Biochemistry
- Accession number :
- edsair.doi.dedup.....365bfa79e24f58ad2c0b698c7529af55
- Full Text :
- https://doi.org/10.1002/jcb.27428