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Establishment and validation of ARMS (amplification-refractory mutation system) for identification of Anisakis species collected from Korean waters
- Source :
- Gene. 691
- Publication Year :
- 2018
-
Abstract
- The identification of Anisakis species in Korean waters was performed using an amplification-refractory mutation system (ARMS). ARMS is typically used to detect single nucleotide polymorphisms or allele types in the same species. However, the application of ARMS for species identification has not been reported. We designed a tetra-primer binding the internal transcribed spacer (ITS) region of 76 samples of Anisakis species and obtained reproducible results. ARMS revealed 380 bp and 130 bp ITS fragments in A. pegreffii, 380 bp and 280 bp fragments in A. simplex, a 130 bp fragments in A. typica and 380 bp, 280 bp and 130 bp fragments in an A. simplex – A. pegreffii hybrid. ARMS using a tetra-primer could be a more rapid, efficient, and reliable tool for monitoring Anisakis species more rapidly than restriction fragment length polymorphism.
- Subjects :
- 0301 basic medicine
Genetics
Anisakis species
Single-nucleotide polymorphism
General Medicine
Biology
DNA, Helminth
Polymerase Chain Reaction
Anisakis
03 medical and health sciences
030104 developmental biology
0302 clinical medicine
Species Specificity
030220 oncology & carcinogenesis
Mutation (genetic algorithm)
DNA, Ribosomal Spacer
Republic of Korea
Animals
Identification (biology)
Internal transcribed spacer
Allele
Restriction fragment length polymorphism
Genotyping
DNA Primers
Subjects
Details
- ISSN :
- 18790038
- Volume :
- 691
- Database :
- OpenAIRE
- Journal :
- Gene
- Accession number :
- edsair.doi.dedup.....32645b5b5f704a9dc9a007f263003603