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Establishment and validation of ARMS (amplification-refractory mutation system) for identification of Anisakis species collected from Korean waters

Authors :
Eun-Ji Ko
Kyung-Yoon Jeon
Hee-Jae Cha
Mi-Kyung Park
Hyun-Su Kim
Mee Sun Ock
Kyung-Wan Baek
Source :
Gene. 691
Publication Year :
2018

Abstract

The identification of Anisakis species in Korean waters was performed using an amplification-refractory mutation system (ARMS). ARMS is typically used to detect single nucleotide polymorphisms or allele types in the same species. However, the application of ARMS for species identification has not been reported. We designed a tetra-primer binding the internal transcribed spacer (ITS) region of 76 samples of Anisakis species and obtained reproducible results. ARMS revealed 380 bp and 130 bp ITS fragments in A. pegreffii, 380 bp and 280 bp fragments in A. simplex, a 130 bp fragments in A. typica and 380 bp, 280 bp and 130 bp fragments in an A. simplex – A. pegreffii hybrid. ARMS using a tetra-primer could be a more rapid, efficient, and reliable tool for monitoring Anisakis species more rapidly than restriction fragment length polymorphism.

Details

ISSN :
18790038
Volume :
691
Database :
OpenAIRE
Journal :
Gene
Accession number :
edsair.doi.dedup.....32645b5b5f704a9dc9a007f263003603