Construction of a mobilizable cloning vector for site-directed mutagenesis of Gram-negative bacteria: application to Rhizobium leguminosarum

A mobilizable cloning vector was constructed from defined fragments to serve as a suicide plasmid for site-directed mutagenesis. The new vector, pKOK4, closely resembles plasmid pBR325. However, the inverted duplication existing in the latter was not introduced. The useful cloning sites of pBR325 ( Eco RI, Hin dIII, Eco RV, Bam HI, Sal I, Pst I and Pvu I) were retained and are located in one of the three resistance markers, Ap R , Cm R or Tc R , respectively. Also, in pKOK4 the Cm R gene retains its own promoter. The mob site of plasmid RP4 was introduced as a 760-bp fragment at a defined location. The mobilization frequency of pKOK4 within Escherichia coli strains is approx. 4 × 10 −2 per recipient cell. The size of pKOK4, deduced from the construction, is 6368 bp. We used pKOK4 for site-directed mutagenesis of hup -specific DNA from Rhizobium leguminosarum B10. Integration of the vector could be distinguished reliably from marker exchange by screening for the antibiotic resistance(s) of the plasmid. This reduced the number of clones to be retested by colony and Southern hybridization to approx. 1% of the original number. Of these, almost 70% contained the desired marker exchange.