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The mechanism of<scp>Single strand binding protein–RecG</scp>binding: Implications for<scp>SSB</scp>interactome function
- Source :
- Protein Sci
- Publication Year :
- 2020
- Publisher :
- Wiley, 2020.
-
Abstract
- The Escherichia coli single‐strand DNA binding protein (SSB) is essential to viability where it functions to regulate SSB interactome function. Here it binds to single‐stranded DNA and to target proteins that comprise the interactome. The region of SSB that links these two essential protein functions is the intrinsically disordered linker. Key to linker function is the presence of three, conserved PXXP motifs that mediate binding to oligosaccharide‐oligonucleotide binding folds (OB‐fold) present in SSB and its interactome partners. Not surprisingly, partner OB‐fold deletions eliminate SSB binding. Furthermore, single point mutations in either the PXXP motifs or, in the RecG OB‐fold, obliterate SSB binding. The data also demonstrate that, and in contrast to the view currently held in the field, the C‐terminal acidic tip of SSB is not required for interactome partner binding. Instead, we propose the tip has two roles. First, and consistent with the proposal of Dixon, to regulate the structure of the C‐terminal domain in a biologically active conformation that prevents linkers from binding to SSB OB‐folds until this interaction is required. Second, as a secondary binding domain. Finally, as OB‐folds are present in SSB and many of its partners, we present the SSB interactome as the first family of OB‐fold genome guardians identified in prokaryotes.
- Subjects :
- Models, Molecular
musculoskeletal diseases
Oligonucleotides
Oligosaccharides
Computational biology
Biochemistry
DNA-binding protein
Interactome
SH3 domain
Single-stranded binding protein
03 medical and health sciences
chemistry.chemical_compound
stomatognathic system
Point Mutation
skin and connective tissue diseases
Molecular Biology
030304 developmental biology
0303 health sciences
Binding Sites
biology
Chemistry
Escherichia coli Proteins
030302 biochemistry & molecular biology
Helicase
Articles
eye diseases
DNA-Binding Proteins
stomatognathic diseases
PXXP Motif
biology.protein
DNA
Binding domain
Subjects
Details
- ISSN :
- 1469896X and 09618368
- Volume :
- 29
- Database :
- OpenAIRE
- Journal :
- Protein Science
- Accession number :
- edsair.doi.dedup.....2f0ab271a3b620fd08c0c065b7826312
- Full Text :
- https://doi.org/10.1002/pro.3855