Back to Search
Start Over
Chirality affects cholesterol-oxysterol association in water, a computational study
- Source :
- Computational and Structural Biotechnology Journal, Computational and Structural Biotechnology Journal, Vol 19, Iss, Pp 4319-4335 (2021)
- Publication Year :
- 2021
- Publisher :
- Research Network of Computational and Structural Biotechnology, 2021.
-
Abstract
- Graphical abstract<br />Highlights • Cholesterol is an indispensable component of mammalian cell membranes. • In water, cholesterol molecules self-assemble. • Cholesterol self-assembly outside the membrane may promote pathologic processes. • Chirality of oxysterol affects its association with cholesterol in water. • Energies of sterol hydration and association in water were calculated and compared.<br />Cholesterol (Chol) is the most prevalent sterol in the animal kingdom and an indispensable component of mammalian cell membranes. Chol content in the membrane is strictly controlled, although the oxidation of phospholipids may change the relative content of membrane Chol. An excess of it results in the formation of pure Chol microdomains in the membrane. It is likely that some Chol molecules detach from the domains and self-assemble in the aqueous environment. This may promote Chol microcrystallisation, which initiates the development of gallstones and atherosclerotic plaque. In this study, the molecular dynamics, free energy perturbation, umbrella sampling and Voronoi diagram methods are used to reveal the details of self-association of Chol and its oxidised forms (oxChol), namely 7α,β-hydroxycholesterol and 7α,β-hydroperoxycholesterol, in water. In the first part of the study the interactions between a sterol monomer and water over a short and longer timescale as well as the energy of hydration of each sterol are analysed. This helps one to understand Chol-Chol and Chol-OxChol with different chirality self-association in water better, which is analysed in the second part of the study. The Voronoi diagram approach is used to determine the relative arrangement of molecules in the dimer and, most importantly, to analyse the dehydration of the contacting surfaces of the assembling molecules. Free energy calculations indicate that Chol and 7β-hydroxycholesterol associate into the most stable dimer and that Chol-Chol is the next most stable of the five dimers studied. Employing different computational methods enables us to obtain an adequate picture of Chol-sterol self-association in water, which includes dynamic, energetic and temporal aspects of the process.
- Subjects :
- Dimer
Biophysics
Biochemistry
Contact area dehydration
Free energy perturbation
7α,β-Oxycholesterol
chemistry.chemical_compound
Molecular dynamics
Structural Biology
polycyclic compounds
Genetics
sterol hydration
Voronoi diagram
contact area dehydration
ComputingMethodologies_COMPUTERGRAPHICS
dimerization
technology, industry, and agriculture
Atherosclerosis
Sterol
Computer Science Applications
Monomer
Membrane
chemistry
7$\alpha\beta$-oxycholesterol
lipids (amino acids, peptides, and proteins)
Umbrella sampling
atherosclerosis
Chirality (chemistry)
Sterol hydration
Dimerization
TP248.13-248.65
Biotechnology
Research Article
Subjects
Details
- Language :
- English
- ISSN :
- 20010370
- Volume :
- 19
- Database :
- OpenAIRE
- Journal :
- Computational and Structural Biotechnology Journal
- Accession number :
- edsair.doi.dedup.....2ecdf10be113d349a5ef71c13f1da190