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Molecular cloning, expression, bioinformatics analysis, and bioactivity of TNFSF13 (APRIL) in the South African clawed frog (Xenopus laevi): a new model to study immunological diseases
- Source :
- Omics : a journal of integrative biology. 17(7)
- Publication Year :
- 2013
-
Abstract
- TNFSF13 is one of the tumor necrosis factor (TNF) superfamily members that plays important roles in immune homeostasis and proliferation or apoptosis of certain tumor cell lines. This report describes the development of Xenopus laevis TNFSF13 as a model to study its important role in relation to immunological diseases. In brief, TNFSF13 from Xenopus laevis (designated XlTNFSF13) was first amplified by RT-PCR and rapid amplification of cDNA end (RACE) techniques. Bioinformatics analyses revealed the gene structure, three-dimensional structure, and evolutionary relationships. Real-time quantitative PCR (QPCR) analysis identified the tissue distribution of XlTNFSF13 in the major visceral organs. The recombinant plasmid SUMO-XsTNFSF13 was expressed in E. coli Rosseta (DE3). Subsequently, the recombinant protein purified through Ni-NTA affinity chromatography was analyzed by SDS-PAGE and confirmed by Western blot analysis. Laser scanning confocal microscopy analysis revealed the binding activity of pSUMO-XsTNFSF13 to the surface of B cells. WST-8 assays further indicated that purified XsTNFSF13 could cause the survival/proliferation of B cells. In conclusion, we underscore that as a model organism for human disease, Xenopus laevis has been widely used in molecular biology research. Yet while TNFSF13 research in mammalian, fish (e.g., zebrafish), mouse, and human is widely available, studies in the amphibian species are limited. The latter area of OMICS and integrative biology scholarship is directly informed with the present study, with a view to implications for the future study of human immunological diseases.
- Subjects :
- African clawed frog
DNA, Complementary
Cell Survival
Protein Conformation
ved/biology.organism_classification_rank.species
Molecular Sequence Data
Xenopus
Molecular cloning
Xenopus Proteins
Biochemistry
Mice
Xenopus laevis
Western blot
Complementary DNA
B-Cell Activating Factor
Genetics
medicine
Escherichia coli
Animals
Tissue Distribution
Amino Acid Sequence
Cloning, Molecular
Model organism
Molecular Biology
Zebrafish
Phylogeny
Cell Proliferation
Cloning
B-Lymphocytes
biology
medicine.diagnostic_test
ved/biology
Computational Biology
biology.organism_classification
Molecular biology
Recombinant Proteins
Immune System Diseases
Molecular Medicine
Sequence Alignment
Biotechnology
Protein Binding
Subjects
Details
- ISSN :
- 15578100
- Volume :
- 17
- Issue :
- 7
- Database :
- OpenAIRE
- Journal :
- Omics : a journal of integrative biology
- Accession number :
- edsair.doi.dedup.....2d71bac51eb3dd811589e2c6ca5c4324