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Correction to: De novo genome assembly of the endangered Acer yangbiense, a plant species with extremely small populations endemic to Yunnan De novo genome assembly of the endangered Acer yangbiense, a plant species with extremely small populations endemic to Yunnan Province, China

Authors :
Ren-Gang Zhang
Peter M. Hollingsworth
Lidan Tao
Guifen Luo
Yongpeng Ma
Hafiz Muhammad Wariss
Zhiling Dao
Huijun Guo
Jing Yang
Quan-Zheng Yun
Weibang Sun
Source :
GigaScience
Publication Year :
2019
Publisher :
Oxford University Press, 2019.

Abstract

Background Acer yangbiense is a newly described critically endangered endemic maple tree confined to Yangbi County in Yunnan Province in Southwest China. It was included in a programme for rescuing the most threatened species in China, focusing on “plant species with extremely small populations (PSESP)”. Findings We generated 64, 94, and 110 Gb of raw DNA sequences and obtained a chromosome-level genome assembly of A. yangbiense through a combination of Pacific Biosciences Single-molecule Real-time, Illumina HiSeq X, and Hi-C mapping, respectively. The final genome assembly is ∼666 Mb, with 13 chromosomes covering ∼97% of the genome and scaffold N50 sizes of 45 Mb. Further, BUSCO analysis recovered 95.5% complete BUSCO genes. The total number of repetitive elements account for 68.0% of the A. yangbiense genome. Genome annotation generated 28,320 protein-coding genes, assisted by a combination of prediction and transcriptome sequencing. In addition, a nearly 1:1 orthology ratio of dot plots of longer syntenic blocks revealed a similar evolutionary history between A. yangbiense and grape, indicating that the genome has not undergone a whole-genome duplication event after the core eudicot common hexaploidization. Conclusion Here, we report a high-quality de novo genome assembly of A. yangbiense, the first genome for the genus Acer and the family Aceraceae. This will provide fundamental conservation genomics resources, as well as representing a new high-quality reference genome for the economically important Acer lineage and the wider order of Sapindales.

Details

Language :
English
ISSN :
2047217X
Volume :
8
Issue :
9
Database :
OpenAIRE
Journal :
GigaScience
Accession number :
edsair.doi.dedup.....2d4ef8ff258281a484beb0fa9cea9c23