Additional file 2 of Whole-genome genotyping and resequencing reveal the association of a deletion in the complex interferon alpha gene cluster with hypothyroidism in dogs

Additional file 2: Figure S2. (a) QQ plot showing the observed versus expected SNPs p-value distribution. After the mixed model approach, the inflation factor λ is equal to 0.93. The QQ plot also shows the empirical genome-wide significance threshold (indicated by a red line and its corresponding –log10 value equal to 5.14) and empirical 95% confidence intervals (CI95) (indicated by solid grey lines). (b) Manhattan plot showing a peak of association on CFA11 (p-valueraw = 9.9 × 10− 6).