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Determination of mean and Gaussian curvatures of highly curved asymmetric lipid bilayers: the case study of the influence of cholesterol on the membrane shape
- Source :
- Physical Chemistry Chemical Physics, Physical Chemistry Chemical Physics, Royal Society of Chemistry, 2014, 16 (32), pp.17052-17061. ⟨10.1039/c4cp01544d⟩, Physical Chemistry Chemical Physics, Royal Society of Chemistry, 2014, 16 (32), pp.17052-17061. 〈10.1039/c4cp01544d〉
- Publication Year :
- 2014
- Publisher :
- HAL CCSD, 2014.
-
Abstract
- Although molecular dynamics simulations of highly curved lipid bilayers have become increasingly popular in recent years, there is no simple and general method of computing the shape and curvature of the bilayer, which is bent arbitrarily in three dimensions. In this work we propose a method, which allows computing local normal, mean and Gaussian curvatures at any point of an arbitrarily curved lipid membrane using molecular dynamics trajectories. The method is based on the analysis of local membrane patches and is applicable to the membranes of any shape and topology – bilayers, vesicles, micelles, bicelles, etc. The method is applied to a highly curved asymmetric DOPC/DOPS lipid bilayer simulated by means of extended coarse-grained molecular dynamics simulations. It is shown that addition of cholesterol makes the membrane more topologically heterogeneous by increasing the content of highly curved regions with either saddle-like or sphere-like topology. The topology of the DOPS lipid domains is more sensitive to the addition of cholesterol than DOPC domains.
- Subjects :
- Lipid Bilayers
General Physics and Astronomy
Model lipid bilayer
Curvature
01 natural sciences
Quantitative Biology::Subcellular Processes
03 medical and health sciences
Molecular dynamics
0103 physical sciences
Physical and Theoretical Chemistry
Lipid bilayer
Topology (chemistry)
ComputingMilieux_MISCELLANEOUS
030304 developmental biology
[PHYS]Physics [physics]
Physics::Biological Physics
0303 health sciences
[ PHYS ] Physics [physics]
010304 chemical physics
Chemistry
Bilayer
Vesicle
Cell Membrane
Condensed Matter::Soft Condensed Matter
Crystallography
Membrane
Cholesterol
Chemical physics
lipids (amino acids, peptides, and proteins)
Subjects
Details
- Language :
- English
- ISSN :
- 14639076 and 14639084
- Database :
- OpenAIRE
- Journal :
- Physical Chemistry Chemical Physics, Physical Chemistry Chemical Physics, Royal Society of Chemistry, 2014, 16 (32), pp.17052-17061. ⟨10.1039/c4cp01544d⟩, Physical Chemistry Chemical Physics, Royal Society of Chemistry, 2014, 16 (32), pp.17052-17061. 〈10.1039/c4cp01544d〉
- Accession number :
- edsair.doi.dedup.....2bed4d0d0701a3bf6be74a3774c43c23
- Full Text :
- https://doi.org/10.1039/c4cp01544d⟩