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Automated Topology Builder Version 3.0: Prediction of Solvation Free Enthalpies in Water and Hexane

Authors :
Koen M. Visscher
Alpeshkumar K. Malde
Alan E. Mark
Martin Stroet
Bertrand Caron
Daan P. Geerke
AIMMS
Molecular and Computational Toxicology
Source :
Journal of Chemical Theory and Computation, 14(11), 5834-5845. American Chemical Society, Stroet, M, Caron, B, Visscher, K M, Geerke, D P, Malde, A K & Mark, A E 2018, ' Automated Topology Builder Version 3.0 : Prediction of Solvation Free Enthalpies in Water and Hexane ', Journal of Chemical Theory and Computation, vol. 14, no. 11, pp. 5834-5845 . https://doi.org/10.1021/acs.jctc.8b00768
Publication Year :
2018

Abstract

The ability of atomic interaction parameters generated using the Automated Topology Builder and Repository version 3.0 (ATB3.0) to predict experimental hydration free enthalpies (ΔGwater) and solvation free enthalpies in the apolar solvent hexane (ΔGhexane) is presented. For a validation set of 685 molecules the average unsigned error (AUE) between ΔGwater values calculated using the ATB3.0 and experiment is 3.8 kJ·mol-1. The slope of the line of best fit is 1.00, the intercept -1.0 kJ·mol-1, and the R2 0.90. For the more restricted set of 239 molecules used to validate OPLS3 (J. Chem. Theory Comput. 2016, 12, 281-296, DOI: 10.1021/acs.jctc.5b00864) the AUE using the ATB3.0 is just 2.7 kJ·mol-1 and the R2 0.93. A roadmap for further improvement of the ATB parameters is presented together with a discussion of the challenges of validating force fields against the available experimental data.

Details

Language :
English
ISSN :
15499618
Database :
OpenAIRE
Journal :
Journal of Chemical Theory and Computation, 14(11), 5834-5845. American Chemical Society, Stroet, M, Caron, B, Visscher, K M, Geerke, D P, Malde, A K & Mark, A E 2018, ' Automated Topology Builder Version 3.0 : Prediction of Solvation Free Enthalpies in Water and Hexane ', Journal of Chemical Theory and Computation, vol. 14, no. 11, pp. 5834-5845 . https://doi.org/10.1021/acs.jctc.8b00768
Accession number :
edsair.doi.dedup.....2a307eaef08f60cce98aa7360a0614ad
Full Text :
https://doi.org/10.1021/acs.jctc.8b00768