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Automated Topology Builder Version 3.0: Prediction of Solvation Free Enthalpies in Water and Hexane
- Source :
- Journal of Chemical Theory and Computation, 14(11), 5834-5845. American Chemical Society, Stroet, M, Caron, B, Visscher, K M, Geerke, D P, Malde, A K & Mark, A E 2018, ' Automated Topology Builder Version 3.0 : Prediction of Solvation Free Enthalpies in Water and Hexane ', Journal of Chemical Theory and Computation, vol. 14, no. 11, pp. 5834-5845 . https://doi.org/10.1021/acs.jctc.8b00768
- Publication Year :
- 2018
-
Abstract
- The ability of atomic interaction parameters generated using the Automated Topology Builder and Repository version 3.0 (ATB3.0) to predict experimental hydration free enthalpies (ΔGwater) and solvation free enthalpies in the apolar solvent hexane (ΔGhexane) is presented. For a validation set of 685 molecules the average unsigned error (AUE) between ΔGwater values calculated using the ATB3.0 and experiment is 3.8 kJ·mol-1. The slope of the line of best fit is 1.00, the intercept -1.0 kJ·mol-1, and the R2 0.90. For the more restricted set of 239 molecules used to validate OPLS3 (J. Chem. Theory Comput. 2016, 12, 281-296, DOI: 10.1021/acs.jctc.5b00864) the AUE using the ATB3.0 is just 2.7 kJ·mol-1 and the R2 0.93. A roadmap for further improvement of the ATB parameters is presented together with a discussion of the challenges of validating force fields against the available experimental data.
- Subjects :
- 010304 chemical physics
Solvation
010402 general chemistry
Topology
01 natural sciences
0104 chemical sciences
Computer Science Applications
Hexane
Set (abstract data type)
chemistry.chemical_compound
chemistry
0103 physical sciences
Computer software
Physical and Theoretical Chemistry
SDG 6 - Clean Water and Sanitation
Topology (chemistry)
Mathematics
Subjects
Details
- Language :
- English
- ISSN :
- 15499618
- Database :
- OpenAIRE
- Journal :
- Journal of Chemical Theory and Computation, 14(11), 5834-5845. American Chemical Society, Stroet, M, Caron, B, Visscher, K M, Geerke, D P, Malde, A K & Mark, A E 2018, ' Automated Topology Builder Version 3.0 : Prediction of Solvation Free Enthalpies in Water and Hexane ', Journal of Chemical Theory and Computation, vol. 14, no. 11, pp. 5834-5845 . https://doi.org/10.1021/acs.jctc.8b00768
- Accession number :
- edsair.doi.dedup.....2a307eaef08f60cce98aa7360a0614ad
- Full Text :
- https://doi.org/10.1021/acs.jctc.8b00768