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Expanding the potential genes of inborn errors of immunity through protein interactions
- Source :
- BMC genomics, vol 22, iss 1, BMC Genomics, Vol 22, Iss 1, Pp 1-8 (2021), BMC Genomics
- Publication Year :
- 2021
- Publisher :
- eScholarship, University of California, 2021.
-
Abstract
- Background Inborn errors of immunity (IEI) are a group of genetic disorders that impair the immune system, with over 400 genes described so far, and hundreds more to be discovered. To facilitate the search for new genes, we need a way to prioritize among all the genes in the genome those most likely to play an important role in immunity. Results Here we identify a new list of genes by linking known IEI genes to new ones by using open-source databases of protein-protein interactions, post-translational modifications, and transcriptional regulation. We analyze this new set of 2,530 IEI-related genes for their tolerance of genetic variation and by their expression levels in various immune cell types. Conclusions By merging genes derived from protein interactions of known IEI genes with transcriptional data, we offer a new list of candidate genes that may play a role in as-yet undiscovered IEIs.
- Subjects :
- Candidate gene
Cell type
Protein-protein interactions
Bioinformatics
1.1 Normal biological development and functioning
Computational biology
QH426-470
Biology
Clinical immunology
Proteomics
Genome
Medical and Health Sciences
Protein–protein interaction
Immune system
Immunity
Underpinning research
Information and Computing Sciences
Genetic variation
Transcriptional regulation
Genetics
2.1 Biological and endogenous factors
Aetiology
Gene
Primary immunodeficiency
Research
Human Genome
Inborn errors of immunity
Biological Sciences
Immune System
Next-generation sequencing
DNA microarray
TP248.13-248.65
Biotechnology
Subjects
Details
- Database :
- OpenAIRE
- Journal :
- BMC genomics, vol 22, iss 1, BMC Genomics, Vol 22, Iss 1, Pp 1-8 (2021), BMC Genomics
- Accession number :
- edsair.doi.dedup.....2992bbbcc4fb4557230999d1b95d1b13