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Next generation sequencing yields the complete mitochondrial genome of the Endangered Chilean silversideBasilichthys microlepidotus(Jenyns, 1841) (Teleostei, Atherinopsidae), validated with RNA-seq
- Source :
- Mitochondrial DNA. 27:1505-1506
- Publication Year :
- 2014
- Publisher :
- Informa UK Limited, 2014.
-
Abstract
- The complete sequence of the mitochondrial genome for the Chilean silverside Basilichthys microlepidotus is reported for the first time. The entire mitochondrial genome was 16,544 bp in length (GenBank accession no. KM245937); gene composition and arrangement was conformed to that reported for most fishes and contained the typical structure of 2 rRNAs, 13 protein-coding genes, 22 tRNAs and a non-coding region. The assembled mitogenome was validated against sequences of COI and Control Region previously sequenced in our lab, functional genes from RNA-Seq data for the same species and the mitogenome of two other atherinopsid species available in Genbank.
- Subjects :
- 0106 biological sciences
Mitochondrial DNA
RNA-Seq
010603 evolutionary biology
01 natural sciences
DNA sequencing
Complete sequence
Genome Size
Gene Order
Genetics
Animals
Molecular Biology
Gene
Phylogeny
Base Composition
Teleostei
biology
Sequence Analysis, RNA
Endangered Species
Fishes
High-Throughput Nucleotide Sequencing
Sequence Analysis, DNA
biology.organism_classification
Mitochondria
010601 ecology
Basilichthys microlepidotus
GenBank
Genome, Mitochondrial
Subjects
Details
- ISSN :
- 19401744 and 19401736
- Volume :
- 27
- Database :
- OpenAIRE
- Journal :
- Mitochondrial DNA
- Accession number :
- edsair.doi.dedup.....281e7e7230e8c7135105b275d255a7fe
- Full Text :
- https://doi.org/10.3109/19401736.2014.953113