Additional file 3 of Rates of evolutionary change of resident Escherichia coli O157:H7 differ within the same ecological niche

Additional file 3 Variants found to be in r2 = 1 linkage disequilibrium with at least three other variants (and a minimum of 5% MAF) across all samples (inclusive of both the chromosome and associated plasmids). Variant locations are described in context to reference genome CP038428.