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GALANT: a Cytoscape plugin for visualizing data as functional landscapes projected onto biological networks

Authors :
José Luiz Rybarczyk-Filho
José Cláudio Fonseca Moreira
Marcio Luis Acencio
Esther Camilo
Ney Lemke
Mauro A. A. Castro
Luiz A. Bovolenta
Source :
Bioinformatics. 29:2505-2506
Publication Year :
2013
Publisher :
Oxford University Press (OUP), 2013.

Abstract

Summary: Network-level visualization of functional data is a key aspect of both analysis and understanding of biological systems. In a continuing effort to create clear and integrated visualizations that facilitate the gathering of novel biological insights despite the overwhelming complexity of data, we present here the GrAph LANdscape VisualizaTion (GALANT), a Cytoscape plugin that builds functional landscapes onto biological networks. By using GALANT, it is possible to project any type of numerical data onto a network to create a smoothed data map resembling the network layout. As a Cytoscape plugin, GALANT is further improved by the functionalities of Cytoscape, the popular bioinformatics package for biological network visualization and data integration. Availability: http://www.lbbc.ibb.unesp.br/galant. Contact: esther@ibb.unesp.br Supplementary Information: Supplementary data are available at Bioinformatics online.

Details

ISSN :
13674811 and 13674803
Volume :
29
Database :
OpenAIRE
Journal :
Bioinformatics
Accession number :
edsair.doi.dedup.....27c2b1c98d7900cfdfe422497b88687c
Full Text :
https://doi.org/10.1093/bioinformatics/btt377