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Full-length transcriptome analysis of Misgurnus anguillicaudatus
- Source :
- Marine genomics. 54
- Publication Year :
- 2020
-
Abstract
- Faithful analysis of transcripts represents a critical component of the gene discovery, genomic characterization and annotation process in species without a reference genome. The present study generated 28,001 full-length transcripts of Misgurnus anguillicaudatus using the Pacific Bioscience (PacBio) single-molecule real-time (SMRT) sequencing system. A total of 77,346 consensus isoforms were identified, and 18,991 complete open reading frames (ORFs) detected. In total, 1345 lncRNAs were identified with high-confidence, with additional identification of a number of well-known transcription factors. The present study may facilitate additional exploration of the genomic signatures of M. anguillicaudatus.
- Subjects :
- 0106 biological sciences
Gene isoform
Male
Misgurnus
Computational biology
Aquatic Science
Biology
010603 evolutionary biology
01 natural sciences
Transcriptome
03 medical and health sciences
Annotation
Open Reading Frames
Genetics
Animals
ORFS
Transcription factor
030304 developmental biology
0303 health sciences
Genome
Gene Expression Profiling
biology.organism_classification
Open reading frame
Cypriniformes
Female
RNA, Long Noncoding
Reference genome
Subjects
Details
- ISSN :
- 18767478
- Volume :
- 54
- Database :
- OpenAIRE
- Journal :
- Marine genomics
- Accession number :
- edsair.doi.dedup.....2728dd604a12759e2d26496c32ba7798