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Full-length transcriptome analysis of Misgurnus anguillicaudatus

Authors :
Tianzhu Wang
Qing Wu
Zhou Xu
Song Yang
Yuejin Long
Yan Wang
Zongjun Du
Wei Luo
Dongjie Wang
Source :
Marine genomics. 54
Publication Year :
2020

Abstract

Faithful analysis of transcripts represents a critical component of the gene discovery, genomic characterization and annotation process in species without a reference genome. The present study generated 28,001 full-length transcripts of Misgurnus anguillicaudatus using the Pacific Bioscience (PacBio) single-molecule real-time (SMRT) sequencing system. A total of 77,346 consensus isoforms were identified, and 18,991 complete open reading frames (ORFs) detected. In total, 1345 lncRNAs were identified with high-confidence, with additional identification of a number of well-known transcription factors. The present study may facilitate additional exploration of the genomic signatures of M. anguillicaudatus.

Details

ISSN :
18767478
Volume :
54
Database :
OpenAIRE
Journal :
Marine genomics
Accession number :
edsair.doi.dedup.....2728dd604a12759e2d26496c32ba7798