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A response surface optimization approach to adjust ionic current conductances of cardiac electrophysiological models. Application to the study of potassium level changes
- Source :
- PLoS ONE, PLoS ONE, Vol 13, Iss 10, p e0204411 (2018), Zaguán. Repositorio Digital de la Universidad de Zaragoza, instname, R-USJ: Repositorio Institucional de la Universidad San Jorge, Universidad San Jorge (USJ), PLOS ONE
- Publication Year :
- 2018
- Publisher :
- Public Library of Science (PLoS), 2018.
-
Abstract
- Cardiac electrophysiological computational models are often developed from previously published models. The new models may incorporate additional features to adapt the model to a different species or may upgrade a specific ionic formulation based on newly available experimental data. A relevant challenge in the development of a new model is the estimation of certain ionic current conductances that cannot be reliably identified from experiments. A common strategy to estimate those conductances is by means of constrained non-linear least-squares optimization. In this work, a novel methodology is proposed for estimation of ionic current conductances of cardiac electrophysiological models by using a response surface approximation-based constrained optimization with trust region management. Polynomial response surfaces of a number of electrophysiological markers were built using statistical sampling methods. These markers included action potential duration (APD), triangulation, diastolic and systolic intracellular calcium concentration, and time constants of APD rate adaptation. The proposed methodology was applied to update the Carro et al. human ventricular action potential model after incorporation of intracellular potassium ([K+]i) dynamics. While the Carro et al. model was well suited for investigation of arrhythmogenesis, it did not allow simulation of [K+]i changes. With the methodology proposed in this study, the updated Carro et al. human ventricular model could be used to simulate [K+]i changes in response to varying extracellular potassium ([K+]o) levels. Additionally, it rendered values of evaluated electrophysiological markers within physiologically plausible ranges. The optimal values of ionic current conductances in the updated model were found in a notably shorter time than with previously proposed methodologies. As a conclusion, the response surface optimization-based approach proposed in this study allows estimating ionic current conductances of cardiac electrophysiological computational models while guaranteeing replication of key electrophysiological features and with an important reduction in computational cost with respect to previously published approaches. The updated Carro et al. model developed in this study is thus suitable for the investigation of arrhythmic risk-related conditions, including those involving large changes in potassium concentration.
- Subjects :
- 0301 basic medicine
Polynomial
Physiology
Computer science
Potassium
Modelos electrofisiológicos cardíacos
lcsh:Medicine
Action Potentials
Algorithms
Calcium
Cations
Computer Simulation
Electrophysiologic Techniques, Cardiac
Extracellular Space
Heart Ventricles
Humans
Models, Cardiovascular
030204 cardiovascular system & hematology
Cardiovascular
Biochemistry
Electrophysiological Properties
Calcium in biology
Reduction (complexity)
0302 clinical medicine
Models
Medicine and Health Sciences
lcsh:Science
Corriente iónica
Computational model
Multidisciplinary
Applied Mathematics
Simulation and Modeling
Time constant
Electrophysiology
Bioassays and Physiological Analysis
Physical Sciences
Action potential duration
Intracellular potassium
Electrophysiologic Techniques
Biological system
Cardiac
Research Article
Optimization
chemistry.chemical_element
Bioenergetics
Research and Analysis Methods
Membrane Potential
Ventricular action potential
03 medical and health sciences
Ionic Current
Extracellular potassium
lcsh:R
Electrophysiological Techniques
Biology and Life Sciences
Investigación aplicada
030104 developmental biology
chemistry
lcsh:Q
Cardiac Electrophysiology
Mathematics
Subjects
Details
- ISSN :
- 19326203
- Volume :
- 13
- Database :
- OpenAIRE
- Journal :
- PLOS ONE
- Accession number :
- edsair.doi.dedup.....2127fcbbfe7a5caa2a579883879f730b
- Full Text :
- https://doi.org/10.1371/journal.pone.0204411