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Synthesis and spectroscopic interpretations of Co(II), Ni(II) and Cu(II) decxycholate complexes with molecular docking of COVId-19 protease
- Source :
- Polish Journal of Chemical Technology, Vol 23, Iss 2, Pp 54-59 (2021)
- Publication Year :
- 2021
- Publisher :
- Walter de Gruyter GmbH, 2021.
-
Abstract
- Co(II), Ni(II) and Cu(II) decxycholate complexes are interesting due to their biologically active and deliberate interest in the research due to their coordination properties. The microanalytical ‘elemental analysis’, molar conductivity, (infrared and Raman) spectroscopy, thermal analyses (TGA/DSC), UV-vis spectra, and ESR for copper(II) decxycholate complex investigations were performed in the structural assignments of Co(II), Ni(II) and Cu(II) decxycholate complexes. Reaction of the sodium deoxycholate ligand (C24H39O4Na) with three transition metal ions form the complexes of formulae, [M(C24H39O4)2(H2O)2]. xH2O where M = Co(II), Ni(II) and Cu(II) where x = 2 for Cu(II) and x = 4 in case of M = Co(II) or Ni(II) metal ions. The FTIR spectra of the complexes show that decxycholate molecule is present as bidentate ligand. Molecular docking utilizing to additionally examine the interaction of COVID-19 (6LU7) with different complexes of deoxycholic acid with Co(II), Ni(II) and Cu(II). Furthermore, in the case of Co(II) deoxycholate complex, the probe is surrounded by amino residues Met235, Pro241, Glu240, Pro108, Gln110, Phe294, and Ile152. The probe molecule of Ni(II) deoxycholate complex is sited close to amino acids Tyr126, Tyr239, Leu287, Leu272, and Lys137. For, Cu(II) deoxycholate complex, the residues of amino acids comprise of Pro132, Pro108, Gln110, Gly109, Ile200, Asn203, Val202, His246, Pro293 and Tyr154. The binding energy was determined from the docking reads for Co(II)–6LU7, Ni(II)–6LU7 and Cu(II)–6LU7 deoxycholate compounds were found to be −446.99, −500.52, −398.13 kcal mol−1 individually.
- Subjects :
- General Chemical Engineering
Metal ions in aqueous solution
Binding energy
chemistry.chemical_element
Molar conductivity
010402 general chemistry
01 natural sciences
symbols.namesake
Molecule
QD1-999
tga/dsc
complexes
010405 organic chemistry
Ligand
Chemistry
molecular docking
General Chemistry
Copper
0104 chemical sciences
Crystallography
deoxycholic acid
Docking (molecular)
symbols
Raman spectroscopy
esr
Biotechnology
Subjects
Details
- ISSN :
- 18994741
- Volume :
- 23
- Database :
- OpenAIRE
- Journal :
- Polish Journal of Chemical Technology
- Accession number :
- edsair.doi.dedup.....1e38a17e5a392e191c17b66295ef707e
- Full Text :
- https://doi.org/10.2478/pjct-2021-0017